PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA634G00003
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HB-other
Protein Properties Length: 1132aa    MW: 127771 Da    PI: 7.497
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA634G00003genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.57e-11663757
                 --HHHHHHHHHHHH.......HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  7 ftkeqleeLeelFe.......knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                  t+ ql++Le+++        +++yp+ +e+e L+k+lgLt + V+ WF  +R + ++
  AA634G00003  6 KTPGQLQALEDFYLaiiyvkaEQMYPTPKEIESLSKSLGLTVKEVRGWFLEKRRRCRR 63
                 5899*********999999988*********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.471164IPR001356Homeobox domain
SMARTSM003899.5E-8168IPR001356Homeobox domain
CDDcd000864.65E-6258No hitNo description
SuperFamilySSF466892.48E-10473IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-12569IPR009057Homeodomain-like
PfamPF000463.3E-8663IPR001356Homeobox domain
PROSITE profilePS5082713.01364423IPR018501DDT domain
SMARTSM005716.6E-12364423IPR018501DDT domain
PfamPF027915.6E-10365420IPR018501DDT domain
PfamPF156122.1E-7644685IPR028942WHIM1 domain
PfamPF156137.7E-11763836IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1132 aa     Download sequence    Send to blast
MKMKRKTPGQ LQALEDFYLA IIYVKAEQMY PTPKEIESLS KSLGLTVKEV RGWFLEKRRR  60
CRRKDKKSLM NLAKDDVVTK NPELYSTSCM STSTSSDFAA PVKKRCSKGK EKATHQKLLT  120
SQHILAKIFR KDGPALGFEF DSLPSRKHKA SWLGSSFVDQ QKQKVARKRK ISELMDHTGQ  180
NCIEESATVR KHGIGKGLMT VWRVMNQNGR DVPPCIDLLD KRLALRKSSA CNPPHQKKKQ  240
RQLASILKQK MLQKSLSKKK RCSINREEEL NQDEIQRAFR ENCELAVDGE AYKETYNKCS  300
ILVDDEELEM RELQEGANTS ACSRHLPSNG RHDCVLCKDL LPQFPPNSVK MKLPFGLHPW  360
DSSPESVKKL FKVVHFLYTY SVTLDLCPFT LDEFTRAFHD KDSLLLGKVH LSLLKLLLHD  420
VATELQKGSY SSASISCKFL ALLQSVESQI LILDLWKDSL NSLTWTEVMR QIMVAAGFGS  480
AKRAVHSEAL SKERRLMKKY GLRLETLKGE LFRILFEQGN SGLKVSELAN APQIAVLNLA  540
TGSEELELSI CSTLTSDITL FEKISESTYR LRVNCFSEDP DKSQSDSDGS GSVDDESDDC  600
SSSSAEDTES PSENLALCKV RYRNSRKHKS NMMEACSEID ESHPGEPWLL GLMEGEYSDL  660
SIDEKLDVFV ALIDLLSSGS TVRSEDLPRA MVDCAPSIYS HGSGGKIKRS SSNQRASWVH  720
GGEFHRNKKL SLLSDSRPVD SSSIVGAVAK LAGDKANNVH PMQSVYLGSD RRFNRYWLFL  780
GPCIANDPGH RCVYFESSED GHWEVINNEE ALRALLSVLD DRGVREACLI ESLEKRETFL  840
CQAMLSRQLI QSETAHSTDI VGEDSSSPVS DIDNNLCPSD ISNDHFSLQH AAIVFEIGSK  900
REKSLLWSRM QEFDDWIWTN FYSDLIAVKH SQRSYLDSLT RCKICHDLYW RDEKHCSICH  960
ATFELDIDLE ERYAIHAATC RNKGENDAFP EHKVLSSQLQ SLKAAVYAIE SAMPEHALIG  1020
AWKKSAHRLW AKRLRRSSTL TELLQVIGDF VGGINEDWLC QSGGDEGNSN TLMAEMISSF  1080
SSLPQTTSAI ALWLVKLDAL IAPYVEKAQP ERNQRCRTRN PSMIYFFTTP SY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15866RRCRRKDKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA634G00003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0496401e-119AL049640.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project).
GenBankAL1615341e-119AL161534.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34.
GenBankCP0026871e-119CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877018.10.0homeobox-DDT domain protein RLT3 isoform X1
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLV4MLN10.0V4MLN1_EUTSA; Uncharacterized protein
STRINGBostr.2021s0009.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96382125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator