PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA61G00546 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 208aa MW: 25516 Da PI: 5.3168 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.7 | 3.5e-17 | 15 | 69 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +f+++q++ Le Fek+ ++ ++ LAk+l+L+ rqV++WFqN+Ra++k AA61G00546 15 KNQKRFNEKQIKSLEMIFEKETRLDPMKKLMLAKELELQPRQVSIWFQNKRARWK 69 66789*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 104.9 | 6.2e-34 | 16 | 107 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +++r++++q+k+LE+ Fe+e++L+p +K la+eL+lqprqv +WFqn+RAR+k+kq+Ek+++ L+++y++l ++ e ++ke++ L +el++ AA61G00546 16 NQKRFNEKQIKSLEMIFEKETRLDPMKKLMLAKELELQPRQVSIWFQNKRARWKSKQIEKEFNILRDNYNHLLSQFEIMKKEKQILISELQR 107 689************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.406 | 11 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-14 | 13 | 75 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-16 | 13 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.0E-14 | 15 | 69 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.22E-11 | 15 | 72 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-17 | 16 | 77 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 46 | 69 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.1E-12 | 71 | 112 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MEERDESKKR KIKNKNQKRF NEKQIKSLEM IFEKETRLDP MKKLMLAKEL ELQPRQVSIW 60 FQNKRARWKS KQIEKEFNIL RDNYNHLLSQ FEIMKKEKQI LISELQRLNE QIQKIPQEIA 120 KQVPLISNKT TDQESYKEIN QEIFRSIDDN NYNIKREYFG FKEEIDEEED LMNIMESTDS 180 CLTFRSDEDN VLLDQTSNNY CPWWEFWS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA61G00546 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013712527.1 | 3e-67 | homeobox-leucine zipper protein ATHB-7 | ||||
Swissprot | P46897 | 3e-64 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A078HUR3 | 8e-66 | A0A078HUR3_BRANA; BnaC04g00750D protein | ||||
STRING | Bo4g007060.1 | 5e-66 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2498 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 6e-57 | homeobox 7 |
Publications ? help Back to Top | |||
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