PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00473
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 828aa    MW: 91965.9 Da    PI: 6.2134
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00473genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-18127177656
                 S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++++q+eeLe++Fe +++p++ er +L+++l+++ rqVk+WFqNrR+++k
  AA61G00473 127 RHSPNQVEELESFFEGCNHPTELERLDLSRRLNMNPRQVKFWFQNRRTQMK 177
                 5799********************************************998 PP
2START157.61e-493365532205
                 HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 la++a++e++ +a  +ep W +       ++n+ e+  kf  ++v      + +ea+++sg+v+ ++ +lv++l+++  qW e+++    + +t + i+
  AA61G00473 336 LALSAMDEFLELAMTNEPIWLRNLsngcLELNQVEYNAKF-IQRVgtipdcFITEASKESGIVIRNSLDLVQTLMNSV-QWAEMFPsiigRSSTKQIIC 432
                 7899******************998999788888888888.44556899*99**************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      g l+lm ae++++splvp R + f+Ry+r l++  w+ivdvSvd+e+  +  +s+    +lpSg+li++++ng++kvtw+eh+  +gr  h
  AA61G00473 433 NGaegtlnGGLHLMDAEFMFPSPLVPiRQVKFLRYCRLLEESLWAIVDVSVDEEDGSS--PSCR---RLPSGCLIQDLANGYCKVTWIEHTKFDGRFLH 526
                 ******************************************************9964..5555...5******************************* PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqce 205
                   +++l ksgla+ga++w+a lqrq e
  AA61G00473 527 PSYKPLFKSGLAFGAQRWMASLQRQSE 553
                 ************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-18104177IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-18116179IPR009057Homeodomain-like
PROSITE profilePS5007115.807119179IPR001356Homeobox domain
SMARTSM003891.9E-17121183IPR001356Homeobox domain
CDDcd000863.09E-15122177No hitNo description
PfamPF000461.1E-15127177IPR001356Homeobox domain
PROSITE patternPS000270154177IPR017970Homeobox, conserved site
PROSITE profilePS5084835.066326557IPR002913START domain
SuperFamilySSF559612.56E-22331555No hitNo description
SMARTSM002345.3E-35335554IPR002913START domain
CDDcd088753.16E-92336553No hitNo description
PfamPF018521.4E-42336553IPR002913START domain
SuperFamilySSF559611.28E-11574748No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MASNGIPDAT SDVNGSPELF SVNDNNGDWS ASFIDSTTDQ LFDSLPEIQM DVENNGEIDG  60
IGEILETNVT QTSTSSREEV IIISSESDNF AGVTGENPDT TATSTAPVAV NTNTNGRPPA  120
KKKYIYRHSP NQVEELESFF EGCNHPTELE RLDLSRRLNM NPRQVKFWFQ NRRTQMKVNS  180
LNNLHIVIFF SFSRCLILIL SFSSMVKQTR FNRNGNRSLE LANDKLREKN KTMRLALRNA  240
TCASCSRHVP TINNQTPLED HNHTTEEIER FHGQSLLPLA AASNHLPNST FNTTIRSNHY  300
AAGAGGDVAG SFMPPTPGFT IPISTGGGRT SSFWHLALSA MDEFLELAMT NEPIWLRNLS  360
NGCLELNQVE YNAKFIQRVG TIPDCFITEA SKESGIVIRN SLDLVQTLMN SVQWAEMFPS  420
IIGRSSTKQI ICNGAEGTLN GGLHLMDAEF MFPSPLVPIR QVKFLRYCRL LEESLWAIVD  480
VSVDEEDGSS PSCRRLPSGC LIQDLANGYC KVTWIEHTKF DGRFLHPSYK PLFKSGLAFG  540
AQRWMASLQR QSESLTETVN SRFPHSQIPI NFDGKASILQ LAKRMTSNFC NGVCNSSDKW  600
ATINNSNLNI NIRILAKTNV NSPGEPKGTI LNGATSVYIP MAPRQLFELL ENINLRPFWD  660
VLCNKERVKE IVNIDKCLNQ SNSISLIGFS RIDPRHDMLI LQEKSIDTTG ALIVYAPVDI  720
FEMQHINNGA ADSTHMPILS SGFAILPDLE PLPNATVDRG GGSSGSNIEP WWMNKGGSLL  780
TLQFQVLVSN LASLNINEES IRNVNHLVSS TVRDIASLIH FKQGSRNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00473
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1