PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00443
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 620aa    MW: 67954.7 Da    PI: 4.8172
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00443genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.91.1e-902446192374
        GRAS   2 velLlecAeavss.....gdlelaqalLarlsel.aspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                 +++L+++Ae + +     ++  laq +Larl+++ ++p+ +   p+qR+a y+teAL++ l++         pp   s++n + ++a++k+fse+sP+l
  AA61G00443 244 INQLFNAAELIGTtinggDNPILAQGILARLNHNlSNPNPNpksPFQRAALYITEALNSLLHE--------SPPLLLSPHNLILKIASYKAFSETSPFL 334
                 6788999988876555545666***********975554433349*****************9........5666667778****************** PP

        GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egpp.slRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrl 186
                 +f ++t Nq+Ile +eg +r+HiiDfdi++G+QW++L+q+++ R+  ++pp sl+iT+++sp++  ++ el+ t+e+L++fA+e+gv+fe+++l ++ l
  AA61G00443 335 QFINFTSNQTILETLEGFNRIHIIDFDIGYGTQWASLIQEISGRNkpGNPPlSLKITAFASPSTIsDEFELRFTEENLRNFAAEFGVSFEIELLNMEIL 433
                 ******************************************9987655666**********99999***************************99999 PP

        GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerik 284
                  + +++ L +++ E+ a+ + lq+ ++       +s+ + +L+++k++sP+v+v ++  +d+ n+++F + ++++l+yy++l +sl+a   +  +++++
  AA61G00443 434 LNPSYWPLYLRSSEKQAIAVNLQINSII------SSYLPLILRFLKQISPNVIVSSDTVLDRsNETPFPNAVIQSLQYYTSLIESLDAAN-PIPDAASS 525
                 999*****99998888888888889997......567788**********************9***********************9984.44578899 PP

        GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgslvlgWkdrpLvsvSaWr 374
                 +Er++++ +i+++++++++  +er      Wr+ ++++GF+pv +s++a+ qa++ll+k +++g++ve++       slvl+W++++Lv+vSaW+
  AA61G00443 526 IERFCIQSSIQKLLMNRHRCWIERLV-TPPWRSLIGQCGFSPVMMSSTAEIQAEYLLQKNPMRGFNVEKRelslcGSSLVLCWQRKELVTVSAWK 619
                 ********************999998.789**************************************998888889999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.042217594IPR005202Transcription factor GRAS
PfamPF035143.7E-88244619IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MPLPFEQFQG KGVLGLSSLS LDSSFLSNQQ KIRHERDLCY LQNLNNGGFP EPTSVLDSIR  60
SPSPSSNHFL SSSTTTTLSS SHGGPSGGGA GAFSGADEKC DQMGFEDLDG VLSSSPSQEQ  120
SIFRLIMAGD VIDPSSGFVG FDPGSGFGSS SLPDPVIHNP NPLFSYGFHE PLQDEKIQIS  180
NPEALINPNP GFFSVGSDPP SSPPPKRLNS GQPGSNQWIF PFSDPGHDSV NPVKLTGDDQ  240
SGLINQLFNA AELIGTTING GDNPILAQGI LARLNHNLSN PNPNPKSPFQ RAALYITEAL  300
NSLLHESPPL LLSPHNLILK IASYKAFSET SPFLQFINFT SNQTILETLE GFNRIHIIDF  360
DIGYGTQWAS LIQEISGRNK PGNPPLSLKI TAFASPSTIS DEFELRFTEE NLRNFAAEFG  420
VSFEIELLNM EILLNPSYWP LYLRSSEKQA IAVNLQINSI ISSYLPLILR FLKQISPNVI  480
VSSDTVLDRS NETPFPNAVI QSLQYYTSLI ESLDAANPIP DAASSIERFC IQSSIQKLLM  540
NRHRCWIERL VTPPWRSLIG QCGFSPVMMS STAEIQAEYL LQKNPMRGFN VEKRELSLCG  600
SSLVLCWQRK ELVTVSAWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-292536198375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00443
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402563.10.0scarecrow-like protein 22
SwissprotQ9M0000.0SCL22_ARATH; Scarecrow-like protein 22
TrEMBLV4NDF30.0V4NDF3_EUTSA; Uncharacterized protein
STRINGXP_006402563.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150661619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.10.0GRAS family protein
Publications ? help Back to Top
  1. Gustafson AM, et al.
    ASRP: the Arabidopsis Small RNA Project Database.
    Nucleic Acids Res., 2005. 33(Database issue): p. D637-40
    [PMID:15608278]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]