PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00296
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MIKC_MADS
Protein Properties Length: 268aa    MW: 30620.3 Da    PI: 8.4186
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00296genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.55.7e-314392150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+
  AA61G00296 43 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 92
                79***********************************************8 PP
2K-box113.32.4e-371152078100
       K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 s +ea+++++qqe++kL+++i+ +q+++Rh++Ge+L+sL+lkeL++Le +Lek+++++RskKnell+++ie++qk+e elq++n++Lr+k+ e
  AA61G00296 115 SITEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNLKELKNLEGRLEKGISRVRSKKNELLIAEIEYMQKREMELQHDNMYLRAKISE 207
                 57899*************************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.9123595IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-393594IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-3236107IPR002100Transcription factor, MADS-box
CDDcd002651.70E-4336109No hitNo description
PRINTSPR004041.4E-323757IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003791IPR002100Transcription factor, MADS-box
PfamPF003193.7E-264491IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-325772IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-327293IPR002100Transcription factor, MADS-box
PfamPF014862.0E-27119205IPR002487Transcription factor, K-box
PROSITE profilePS5129715.477121211IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEEEGGSINN GINIEEGGES SNKQQTMMKN NVGGGGRGKI EIKRIENTTN RQVTFCKRRN  60
GLLKKAYELS VLCDAEVALV IFSTRGRLYE YANNSVKGTI ERYKKACSDA VNPPSITEAN  120
TQYYQQEASK LRRQIRDIQN SNRHIVGESL GSLNLKELKN LEGRLEKGIS RVRSKKNELL  180
IAEIEYMQKR EMELQHDNMY LRAKISEGTR NQEEEESNNV IEGRERMRLY ETGVSSSHQN  240
YDRSFIPVNL LEPNQQFSGQ DQPPLQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A5e-2036103168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B5e-2036103168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C5e-2036103168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D5e-2036103168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1tqe_P5e-2036103269Myocyte-specific enhancer factor 2B
1tqe_Q5e-2036103269Myocyte-specific enhancer factor 2B
1tqe_R5e-2036103269Myocyte-specific enhancer factor 2B
1tqe_S5e-2036103269Myocyte-specific enhancer factor 2B
6c9l_A5e-2036103269Myocyte-specific enhancer factor 2B
6c9l_B5e-2036103269Myocyte-specific enhancer factor 2B
6c9l_C5e-2036103269Myocyte-specific enhancer factor 2B
6c9l_D5e-2036103269Myocyte-specific enhancer factor 2B
6c9l_E5e-2036103269Myocyte-specific enhancer factor 2B
6c9l_F5e-2036103269Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00296
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR7272350.0FR727235.1 Lepidium campestre mRNA for SHATTERPROOF1-like protein (shp1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191437.11e-146K-box region and MADS-box transcription factor family protein
RefseqXP_002876479.11e-146agamous-like MADS-box protein AGL1 isoform X2
SwissprotP293811e-147AGL1_ARATH; Agamous-like MADS-box protein AGL1
TrEMBLG0LEV81e-146G0LEV8_LEPCM; SHATTERPROOF1-like protein
STRINGfgenesh2_kg.5__2325__AT3G58780.11e-145(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33412350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-140MIKC_MADS family protein
Publications ? help Back to Top
  1. Matalon O, et al.
    Dephosphorylation of the adaptor LAT and phospholipase C-γ by SHP-1 inhibits natural killer cell cytotoxicity.
    Sci Signal, 2016. 9(429): p. ra54
    [PMID:27221712]
  2. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]