PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA61G00253 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | LBD | ||||||||
Protein Properties | Length: 222aa MW: 24388.9 Da PI: 6.5726 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.5 | 2.5e-39 | 19 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkCak+Cv+apyf++e+ + +fa++hk+FGasn +kll++lp+++r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l+ lk AA61G00253 19 PCGACKFLRRKCAKGCVFAPYFCHEEgATHFAAIHKVFGASNASKLLSQLPTSDRREAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLEILK 117 7***********************9989*********************************************************************99 PP DUF260 99 ee 100 ++ AA61G00253 118 QQ 119 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.385 | 18 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-37 | 19 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MSSSSSSSGS GFGSGSGSPC GACKFLRRKC AKGCVFAPYF CHEEGATHFA AIHKVFGASN 60 ASKLLSQLPT SDRREAAITI SYEAQARLQD PIYGCVSHIF ALQQQVVNLQ AQLEILKQQA 120 SQSMILADSQ SSQTPNYQNL QEHQNLHNQT HLVYQTGSGC PMTGSYYTEN SSGRGEDQYS 180 SVSTMEEFSM YSDLEQHLNT FNHQEHHLKD LQATTFGYIS FS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-37 | 14 | 114 | 6 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-37 | 14 | 114 | 6 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA61G00253 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_191378.1 | 3e-99 | lateral organ boundaries-domain 29 | ||||
Swissprot | Q9M2J7 | 1e-100 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A178VM67 | 6e-98 | A0A178VM67_ARATH; LBD29 | ||||
STRING | Bostr.20903s0070.1.p | 1e-99 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-84 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
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