PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA61G00144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 226aa MW: 25893.7 Da PI: 9.45 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.9 | 1.7e-13 | 50 | 96 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+e+ErrRR+riNs f++Lr+ll ++ K +Ka+ L k+++ +k+Lq AA61G00144 50 NHKEAERRRRQRINSHFNNLRSLLSSP-----SKTDKATLLGKVIQRVKDLQ 96 8*************************9.....7*****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.748 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-13 | 49 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.09E-9 | 50 | 98 | No hit | No description |
SuperFamily | SSF47459 | 7.85E-14 | 50 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.3E-11 | 50 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.1E-12 | 52 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 4.7E-5 | 131 | 195 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
METPTPDSML YSFFTSNNYI STTKTSSYYP VAIKETTTSH DIKTRASLNN HKEAERRRRQ 60 RINSHFNNLR SLLSSPSKTD KATLLGKVIQ RVKDLQQQTL EISETLPSET DEISVHNFTN 120 VSNNVGRIIL KVSICCVDRS NLLEDLMKIL KSLKMETIRA EISTIGARIR NVLFVEVEEE 180 NGVEFVKILE NALKSLVDRS TKSLVECVFS GERLKRRRDI EHIMMV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA61G00144 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006402950.1 | 2e-73 | putative transcription factor bHLH107 | ||||
Swissprot | Q9LET0 | 2e-68 | BH107_ARATH; Putative transcription factor bHLH107 | ||||
TrEMBL | A0A3P5YP25 | 6e-72 | A0A3P5YP25_BRACM; Uncharacterized protein | ||||
TrEMBL | V4LWX3 | 4e-72 | V4LWX3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006402950.1 | 7e-73 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3642 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56770.1 | 2e-62 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|