PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00075
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 556aa    MW: 61797.3 Da    PI: 8.3246
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00075genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-08254274526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f++ G C+ Gd+C +aHg
  AA61G00075 254 PCPEFRK-GSCPKGDSCEYAHG 274
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.8E-1528188IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.08E-1547179IPR020683Ankyrin repeat-containing domain
PfamPF127966.5E-767138IPR020683Ankyrin repeat-containing domain
SMARTSM002487.2E-471101IPR002110Ankyrin repeat
PROSITE profilePS5029714.47771180IPR020683Ankyrin repeat-containing domain
CDDcd002042.37E-1273169No hitNo description
SMARTSM002480.95106138IPR002110Ankyrin repeat
SMARTSM003566.3E-5249275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976249276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-6254275IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5254274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-5281313IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.207284308IPR000571Zinc finger, CCCH-type
SMARTSM0035618284307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MCNGSKSNLC SAKTIAEIEF NNEKTMASLL EFAACDDLPS FRNEIEEKGV EIDELGLWYC  60
KRIGTNKMGF EERTPLMVAA MYGSLEVLTY IISTGKSNVN KACGDERVTA LHCAVAGCSV  120
SVLEVIKILL DASAAPNSVD AYGNLPIDLF LRVSRFVAKP RRKAVEFLLN GSTNLIEKDV  180
ETIKILAATK YPADASLPDI NEGVYGTDEF RMFSFKVKPC SRAYSHDWTE CPFVHPGENA  240
RRRDPRKYPY TCVPCPEFRK GSCPKGDSCE YAHGVFESWL HPAQYKTRLC KDETGCSRKV  300
CFFAHRREEL RPVNASTGSA MVSPRSNTSQ SPFSSLEMPV LSPLVYSSGV LTPPISPMAN  360
NGGSMSPRNN GLWQNRVNNI TPPALQLTGS RLKSTLSARD IDMEMEMRQL QSPSRIAQMK  420
QYPSSPARNQ QQNHGFDSSV GMAAVMNANA RTSAFTQRSL SFKPVLVGTG NMSDWGSRSG  480
NLDWGMEGEK LRRSLSFGIN GSNKKSAVKR PVRDYSDEPD VSWVNSLVKD SDLNEKVRLP  540
IWAEQMYRRE QEQIVV
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00075
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403038.10.0zinc finger CCCH domain-containing protein 47
RefseqXP_020880437.10.0zinc finger CCCH domain-containing protein 47
SwissprotQ93ZS90.0C3H47_ARATH; Zinc finger CCCH domain-containing protein 47
TrEMBLV4NEL10.0V4NEL1_EUTSA; Uncharacterized protein
STRINGXP_006403038.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55980.10.0salt-inducible zinc finger 1
Publications ? help Back to Top
  1. LeBlanc M,Kim G,Patel B,Stromberg V,Westwood J
    Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona.
    New Phytol., 2013. 200(4): p. 1225-33
    [PMID:23914903]
  2. Liang Y,Gao Y,Jones AM
    Extra Large G-Protein Interactome Reveals Multiple Stress Response Function and Partner-Dependent XLG Subcellular Localization.
    Front Plant Sci, 2017. 8: p. 1015
    [PMID:28659958]