PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA60G00158
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GeBP
Protein Properties Length: 294aa    MW: 34908.4 Da    PI: 8.808
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA60G00158genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57390.71.7e-2854150298
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                 ++++ w+++De+++L+G++d+++  + s+++d d f  ++kk +++ +sk+ql+ Kir+LK +f+++ +k +++k+ +f++++d ++f+ls+ +Wg+
  AA60G00158  54 NSKMNWTKNDELIILRGILDYQNVAELSYKADSDTFLLYIKKFMNVMFSKEQLMRKIRKLKTRFENNIEKFNNEKDLKFASSDDYEVFKLSNLLWGQ 150
                 67899******************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.9E-2257149IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDRVISEEDS GLHDGGNRLK LTRKSTIEED EDSGTSAMLR RRKQPKITLF STPNSKMNWT  60
KNDELIILRG ILDYQNVAEL SYKADSDTFL LYIKKFMNVM FSKEQLMRKI RKLKTRFENN  120
IEKFNNEKDL KFASSDDYEV FKLSNLLWGQ NKDQFDAPLH INQPNSYTEL EKEKQQKQQQ  180
QEKKKKEKQQ EQQQQEKKEK EKQQEQKQEN EKNGEKEDSE EEWCDLEDAL EATSFKNLSK  240
YHQKLMLQSL RNNIGADKRK ELRNEWKTLL VEEVKLNIKK EAFSAKLVNA LISN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA60G00158
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124401528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00270.12e-30DNA-binding storekeeper protein-related transcriptional regulator