PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA60G00152 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | GRF | ||||||||
Protein Properties | Length: 379aa MW: 42168.6 Da PI: 7.8867 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.5 | 7.6e-26 | 138 | 181 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v +g+k+CErH+hrgr+rsrk++e AA60G00152 138 DPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRKPVE 181 79***************************************987 PP | |||||||
2 | QLQ | 53.7 | 6.2e-19 | 69 | 105 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s F++aQ+q+L+ Q+l+y+y++a++ vP+eLl++i+k AA60G00152 69 SFFSWAQWQELELQALIYRYMLAGAAVPQELLLPIKK 105 67*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.3E-12 | 69 | 105 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.247 | 70 | 105 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.5E-13 | 71 | 103 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.54 | 138 | 182 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.9E-22 | 139 | 181 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MDLQLKQWRN QTESEEQQPS AAKIPKHVFD QIQSQAALPL FAPEPNSSKL SSLSGLSPDS 60 SSRFPKMGSF FSWAQWQELE LQALIYRYML AGAAVPQELL LPIKKSLLHL SPSYFLHHPL 120 QHLPHYQPAW YLGRAAMDPE PGRCRRTDGK KWRCSRDVFA GHKYCERHMH RGRNRSRKPV 180 EIPTPTQTQT TPTPTNLNHT TNSASNQTRS SFDFGGDGVN VGDGQGSSFF FSGSSNSSSD 240 LLHLSQRDPF VKADPFMSHI FLQKMSEIMS CGFCNSCSEM KQGSNNNNKR SYETHGGFGD 300 NRSDNGHILR HFFDDWPRSS LQEADTTSSP MSSATCLSIS MPGNSSSDVS LKLSTGNEEE 360 DRSNNNGGGG GNSNNGREQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA60G00152 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010509475.1 | 1e-166 | PREDICTED: growth-regulating factor 3 | ||||
Swissprot | Q8L8A7 | 1e-113 | GRF4_ARATH; Growth-regulating factor 4 | ||||
TrEMBL | A0A087H2J0 | 1e-158 | A0A087H2J0_ARAAL; Uncharacterized protein | ||||
STRING | XP_010509475.1 | 1e-166 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1926 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 2e-76 | growth-regulating factor 3 |
Publications ? help Back to Top | |||
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