PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA60G00097 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | C2H2 | ||||||||
Protein Properties | Length: 108aa MW: 12488.7 Da PI: 10.7185 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.001 | 48 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C +C++ Fs+ s + H++t H AA60G00097 48 FYCLHCDRYFSNASVRNDHLKTkkH 72 78******************98666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.83E-19 | 34 | 98 | No hit | No description |
SMART | SM00451 | 7.9E-11 | 45 | 79 | IPR003604 | Zinc finger, U1-type |
Pfam | PF12171 | 3.9E-10 | 47 | 73 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 50 | 72 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MGRCPTRKVK KRRLSHKTAR RDKFELRKPE KEIKPLQLDE DLPGMGQFYC LHCDRYFSNA 60 SVRNDHLKTK KHKKRVKIMM GEAPHSQLDA DLAAGMGKPD NGPKLMAM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 13 | RKVKKRRL |
2 | 11 | 28 | RRLSHKTARRDKFELRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA60G00097 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_565854.1 | 5e-64 | zinc finger (C2H2 type) family protein | ||||
TrEMBL | A0A178VR31 | 5e-64 | A0A178VR31_ARATH; Uncharacterized protein | ||||
STRING | AT2G36930.1 | 2e-63 | (Arabidopsis thaliana) |