PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA60G00081
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 315aa    MW: 36041.5 Da    PI: 6.8756
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA60G00081genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.6e-07206253448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT +E  +lvd++ ++G g W+ I + +      Rt+ +++++w+++l
       AA60G00081 206 WTVDEVVKLVDGISEFGVGKWTDIKNLFFkssSYRTPIDIRDKWRNLL 253
                      ****************************999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-11198259IPR009057Homeodomain-like
PROSITE profilePS5129413.927198257IPR017930Myb domain
SMARTSM007176.2E-8202255IPR001005SANT/Myb domain
CDDcd116601.84E-18204254No hitNo description
SuperFamilySSF466892.32E-15204262IPR009057Homeodomain-like
PfamPF139212.0E-6206259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSGMKHFLME SKHDNIAMDS FLGFGIEMEE VSYGFDFSFL PDYGGLESCS TLDDEAGLKL  60
EILDGFLDEV EDIYASQDLS SIGDHILPET EVTKKVSESD SYYPGISRTH RLSELSKESL  120
PPHNESKNIS SNKILYQEPV KDTTLKASFS YDFRPRKGPL KKCLHTTTEK NTLFDDQLTT  180
SESGDDISVT NQCKSRCDRR KNQRMWTVDE VVKLVDGISE FGVGKWTDIK NLFFKSSSYR  240
TPIDIRDKWR NLLKASYADR EAEEKRRSGS RPIPKEIVDR VRELACLHPY PYSKSLFDSS  300
TSRNSSRKKK KTKKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA60G00081
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509403.11e-123PREDICTED: uncharacterized protein LOC104785817
RefseqXP_010509404.11e-123PREDICTED: uncharacterized protein LOC104785817
RefseqXP_024003970.11e-123uncharacterized protein LOC18026736 isoform X2
RefseqXP_024003971.11e-123uncharacterized protein LOC18026736 isoform X2
TrEMBLV4MIC41e-119V4MIC4_EUTSA; Uncharacterized protein
STRINGBostr.23794s0389.1.p1e-130(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.24e-25TRF-like 6