PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA60G00005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | LBD | ||||||||
Protein Properties | Length: 119aa MW: 13593.8 Da PI: 8.8351 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.7 | 1.6e-37 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C++dC+++pyfp ++p+kfa++hk++Ga nv+k+l++lp ++r++a++s+ +eAe+r +dPvyG+vg+i+ lq +++q+++ la++++ AA60G00005 7 RCAACKYLRRRCPQDCIFSPYFPPNSPEKFACIHKIYGAGNVSKMLHQLPVQTRSEAVESMWFEAECRRDDPVYGVVGIIHLLQIHIQQTQNLLAKTQA 105 6********************************************************************************************999998 PP DUF260 100 e 100 e AA60G00005 106 E 106 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.545 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-36 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MMNPTKRCAA CKYLRRRCPQ DCIFSPYFPP NSPEKFACIH KIYGAGNVSK MLHQLPVQTR 60 SEAVESMWFE AECRRDDPVY GVVGIIHLLQ IHIQQTQNLL AKTQAEIAAS RSNIVKPDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-34 | 8 | 107 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-34 | 8 | 107 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA60G00005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_189300.1 | 1e-61 | LOB domain-containing protein 24 | ||||
Swissprot | P59468 | 9e-63 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A291LR10 | 3e-60 | A0A291LR10_BRARR; Transcription factor LBD23 | ||||
STRING | Bostr.0556s0333.1.p | 1e-61 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-54 | LOB domain-containing protein 24 |