PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA60G00002

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

GRAS

Protein Properties

Length: 733aa MW: 82688.2 Da PI: 6.2323

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA60G00002	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	382.3	5.6e-117	359	728	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+av+++d ++a++lL++++++++p+gd +qRla++f+ +L+arla+++s++yk + +++ s + +l+a++lf ++P+ k+s+++aN AA60G00002 359 LRSLLIHCAQAVAADDRRCASQLLKQIRQHSTPYGDGNQRLAHCFASGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLACCPFRKLSYFIAN 454 689*************************************************************9999...999******************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 +++ +av +++rvH+iDf+i +G+QWp+L++ ++ g+p+lRiTg++ p++g ++++eetg+rLa +A+++gvpfe+++ +ak++++++le+L++ AA60G00002 455 KTLRDAVGNSQRVHVIDFGILYGFQWPTLIHRFSI--YGSPKLRITGIEFPQPGfrPAQRVEETGQRLAAYAKQFGVPFEYKA-IAKKWDAVQLEDLDI 550 ******************************8..8***********9*************************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +++E++ Vn+ ++ ++l+desv++es rd+vL+l+ +++P+++v+ + +n++ F++rf eal ++s++fd+l++ +pre+eer+++E+e++gre+ AA60G00002 551 DKDEVVLVNCLFRAENLHDESVKVESSRDAVLNLISKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLDTIVPREDEERMFLENEVFGREAL 649 *********************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nv+aceg er+er et+++W+ r +++G+ +vp++ +++k ++k++ + + v++++ +l++gWk+r+++++S+W+ AA60G00002 650 NVIACEGWERVERPETYKQWQVRAMRSGLVQVPFDPNIVKASFQKVQKYYHKDFVVDQDNRWLLQGWKGRTVMALSVWK 728 **********************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.799	333	708	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-114	359	728	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MITEPTLNGL SGAINPTVLP DQSSSLLPNL SFTAPVTLFD ANCSGHRYDG FSYSFSDVRS 60 SVVTEAPENS DLSREEDPAD DYDFSDAVLG YINQMLMDED MGDKVCMLQE SLDLEAAERS 120 LYEAIGKKYP PSPEPNLAYD ESNGENLDHV VPGDYTGNRL GDGYFIENDA IRPLSGFTLD 180 FRNPQSRSSV PTVSHSSYNA SNGLITVYGN RLDESSNTSY PVVNRENQSV WLFRRGIEEA 240 SRFLPDKNEL IVDFREDYGR NKGRKNPSRD ETGFEEERSS KLPAVFPETI LRSDMVDKIL 300 VHVPGEESMK EFDALREVLK KGVEKKPSAP QDGKRRARGL NGRRGRGRGQ SGKREVIDLR 360 SLLIHCAQAV AADDRRCASQ LLKQIRQHST PYGDGNQRLA HCFASGLEAR LAGTGSQIYK 420 GIVSKPRSAA AVLKAHQLFL ACCPFRKLSY FIANKTLRDA VGNSQRVHVI DFGILYGFQW 480 PTLIHRFSIY GSPKLRITGI EFPQPGFRPA QRVEETGQRL AAYAKQFGVP FEYKAIAKKW 540 DAVQLEDLDI DKDEVVLVNC LFRAENLHDE SVKVESSRDA VLNLISKINP DLFVFGIVNG 600 AYNAPFFVTR FREALFHFSS IFDMLDTIVP REDEERMFLE NEVFGREALN VIACEGWERV 660 ERPETYKQWQ VRAMRSGLVQ VPFDPNIVKA SFQKVQKYYH KDFVVDQDNR WLLQGWKGRT 720 VMALSVWKPG SKA

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MITEPTLNGL SGAINPTVLP DQSSSLLPNL SFTAPVTLFD ANCSGHRYDG FSYSFSDVRS  60
SVVTEAPENS DLSREEDPAD DYDFSDAVLG YINQMLMDED MGDKVCMLQE SLDLEAAERS  120
LYEAIGKKYP PSPEPNLAYD ESNGENLDHV VPGDYTGNRL GDGYFIENDA IRPLSGFTLD  180
FRNPQSRSSV PTVSHSSYNA SNGLITVYGN RLDESSNTSY PVVNRENQSV WLFRRGIEEA  240
SRFLPDKNEL IVDFREDYGR NKGRKNPSRD ETGFEEERSS KLPAVFPETI LRSDMVDKIL  300
VHVPGEESMK EFDALREVLK KGVEKKPSAP QDGKRRARGL NGRRGRGRGQ SGKREVIDLR  360
SLLIHCAQAV AADDRRCASQ LLKQIRQHST PYGDGNQRLA HCFASGLEAR LAGTGSQIYK  420
GIVSKPRSAA AVLKAHQLFL ACCPFRKLSY FIANKTLRDA VGNSQRVHVI DFGILYGFQW  480
PTLIHRFSIY GSPKLRITGI EFPQPGFRPA QRVEETGQRL AAYAKQFGVP FEYKAIAKKW  540
DAVQLEDLDI DKDEVVLVNC LFRAENLHDE SVKVESSRDA VLNLISKINP DLFVFGIVNG  600
AYNAPFFVTR FREALFHFSS IFDMLDTIVP REDEERMFLE NEVFGREALN VIACEGWERV  660
ERPETYKQWQ VRAMRSGLVQ VPFDPNIVKA SFQKVQKYYH KDFVVDQDNR WLLQGWKGRT  720
VMALSVWKPG SKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-46	365	731	25	382	Protein SCARECROW
5b3h_A	3e-46	365	731	24	381	Protein SCARECROW
5b3h_D	3e-46	365	731	24	381	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA60G00002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410955.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	V4MIK6	0.0	V4MIK6_EUTSA; Uncharacterized protein
STRING	XP_006410955.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein