PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA5G00182
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TCP
Protein Properties Length: 365aa    MW: 41783.5 Da    PI: 6.4257
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA5G00182genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.81.4e-2868174266
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................................... 65 
                 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl+++k+ i+ l+ +                                    
  AA5G00182  68 FGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLNQPSKVIDWLLEASKEDIDHLPPLqfpqgfhqmypnlnfgeynnlgflesfdlggessrt 167
                689*************************************************************666655555555555555555444444444333222 PP

        TCP  66 ......s 66 
                       
  AA5G00182 168 rsrneiH 174
                2221110 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.26170128IPR017887Transcription factor TCP subgroup
PfamPF036342.0E-2470166IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MRSQDCEEEE DNITKQEIEQ HQHHNHQDTL NLNHMLHHHQ QQHPQASSSR QWTSAFRNPR  60
IVRVSRAFGG KDRHSKVCTI RGLRDRRIRL SVPTAIQLYD LQDRLGLNQP SKVIDWLLEA  120
SKEDIDHLPP LQFPQGFHQM YPNLNFGEYN NLGFLESFDL GGESSRTRSR NEIHQRESFD  180
LGGESSRTRT RNDMIQRESF DLEKGKWVKL DDQEQGFDSN QENFEFSNQS NKLYPMNSHY  240
NLGHLQHSLE QSGNNNVTIA MPSSSRSNVS NQNLNLESPA AAAATRDGSQ LFFGPPVTST  300
MSSLFPTYPS YFGASSHLQL FSSNSASQQH MEMSGNNSNL IRPFHHLMNS NNETDNQSSD  360
NDSNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-1975129155Putative transcription factor PCF6
5zkt_B9e-1975129155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA5G00182
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280693.11e-131transcription factor TCP5
SwissprotQ9FME31e-125TCP5_ARATH; Transcription factor TCP5
TrEMBLR0EXI81e-130R0EXI8_9BRAS; Uncharacterized protein
STRINGXP_006280693.11e-131(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-116TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]