PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA5G00136
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family AP2
Protein Properties Length: 463aa    MW: 52408.9 Da    PI: 9.5861
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA5G00136genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-20101151255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp   + k  r++lg+++ta eAa+a+++a+ +l+g
  AA5G00136 101 HYRGVRRRP-WGKYAAEIRDP---NrKGSRIWLGTYDTAVEAARAYDQAAFELRG 151
                8********.**********9...6566*************************98 PP
2AP253.55.9e-17380430255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp   g k  r++lg+f    +Aa+a++ a+ kl+g
  AA5G00136 380 HYRGVRRRP-WGKFAAEIRDP---GkKGSRVWLGTFENDIDAARAYDYAAFKLRG 430
                7********.**********9...6556*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-32100160IPR001471AP2/ERF domain
CDDcd000183.23E-31100159No hitNo description
PROSITE profilePS5103224.908101159IPR001471AP2/ERF domain
PfamPF008474.8E-14101151IPR001471AP2/ERF domain
SMARTSM003801.6E-38101165IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-23101161IPR016177DNA-binding domain
PRINTSPR003674.3E-10102113IPR001471AP2/ERF domain
PRINTSPR003674.3E-10125141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-30379439IPR001471AP2/ERF domain
PfamPF008472.6E-11380430IPR001471AP2/ERF domain
CDDcd000188.54E-18380438No hitNo description
SuperFamilySSF541712.35E-21380439IPR016177DNA-binding domain
SMARTSM003807.6E-34380444IPR001471AP2/ERF domain
PROSITE profilePS5103224.342380438IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MNTNQESLVI DFITQHLLND FTTSIEETTK VSTFNNSTPN PSQITNKVPN FNSNSTSITL  60
NNQTLKPNSS LNRRKPPLPN LSVPRKVSNT IQLDQEEERK HYRGVRRRPW GKYAAEIRDP  120
NRKGSRIWLG TYDTAVEAAR AYDQAAFELR GRKAILNFPL EIKNSLELIT VGKRKRVQNS  180
PVTEPEEEKT TARVKVEAEE ETVVPLTPSS WMEFWDVGVG DGIFRVSPLS PLSPLVGKSQ  240
LMMTYQKKNP NFSSKLITFL SKTIKMVTFD EISDLEVIQK CLLEDLTIPE SFMEEDLAFD  300
TSFISTFWSQ ESINQYPKLE DLAFDESLSS SSTSSSTSRT SLSSSSETKG INPNLNPSSP  360
ETETISIESN PKRFLQEVRH YRGVRRRPWG KFAAEIRDPG KKGSRVWLGT FENDIDAARA  420
YDYAAFKLRG RKAVLNFPLD AGKYDAPANS GRKRRRNDAE ISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-26984381174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1451455RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA5G00136
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478171.12e-99PREDICTED: ethylene-responsive transcription factor ERF104
SwissprotQ9FKG19e-90EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLV4KKN73e-96V4KKN7_EUTSA; Uncharacterized protein
STRINGXP_006394488.14e-97(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.12e-91ethylene response factor 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]