PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA58G00001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | GATA | ||||||||
Protein Properties | Length: 146aa MW: 16182.4 Da PI: 10.1862 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57 | 2.6e-18 | 42 | 76 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C Cgt+kTplWR gp g+k+LCnaCG+++rkk++ AA58G00001 42 CNDCGTSKTPLWRGGPAGPKSLCNACGIRNRKKRR 76 99******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.3E-14 | 36 | 88 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.215 | 36 | 72 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.33E-12 | 36 | 78 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 9.4E-15 | 40 | 76 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.20E-12 | 41 | 76 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 42 | 67 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.2E-16 | 42 | 76 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MLDHNENVFD SEDTKMKLTG GDMIEQSKSS SSSSSNGDKK TCNDCGTSKT PLWRGGPAGP 60 KSLCNACGIR NRKKRRSVIS TEDKKSKKSD LKRNSKLGDS LKQRMMELSR DVMMQRSTVE 120 KQRRKLGEEE QAAVLLMALS CASVYA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA58G00001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010546999.1 | 2e-61 | PREDICTED: GATA transcription factor 15-like | ||||
Swissprot | Q8LG10 | 1e-60 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A1J3JSN1 | 2e-59 | A0A1J3JSN1_NOCCA; GATA transcription factor 16 | ||||
STRING | XP_010546999.1 | 7e-61 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5050 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 9e-62 | GATA transcription factor 15 |
Publications ? help Back to Top | |||
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