PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA57G00375
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 718aa    MW: 79096.1 Da    PI: 5.6083
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA57G00375genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1958113156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t+ q++eLe++F+++++p+ ++r+eL+++l+L+  qVk+WFqN+R+++k
  AA57G00375  58 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMK 113
                 678899***********************************************998 PP
2START187.66.5e-592544541187
                 HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
       START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                 ela +a++elv++a+  +p+Wv+s    e++n+de+ ++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +     +a tlev+s+
  AA57G00375 254 ELAVAAMEELVRMAQTHDPLWVTSEnsgEILNEDEYFRTFPRGIGpkplgLRSEASRESTVVIMNHINLVEILMDVN-QWSCVFCgivsRALTLEVLST 351
                 57899*************************************999********************************.*****999999********** PP

                 T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
       START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                 g      galq+m++e+q++splvp R+ +fvRy++q+++g w++vdvS+ds ++ p    + R++++pSg+li++++ng+skvtwvehv++++r++h+
  AA57G00375 352 GvagnynGALQVMTSEFQVPSPLVPtRENYFVRYCKQHSDGIWAVVDVSLDSLRPSP----ITRSRRRPSGCLIQELPNGYSKVTWVEHVEVDDRSVHN 446
                 *******************************************************99....7************************************* PP

                 HHHHHHHH CS
       START 180 llrslvks 187
                 ++++lv +
  AA57G00375 447 MYKPLVDT 454
                 ****9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-2240113IPR009057Homeodomain-like
SuperFamilySSF466891.59E-1849115IPR009057Homeodomain-like
PROSITE profilePS5007117.15155115IPR001356Homeobox domain
SMARTSM003893.9E-1856119IPR001356Homeobox domain
PfamPF000463.9E-1758113IPR001356Homeobox domain
CDDcd000864.36E-1958116No hitNo description
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PROSITE profilePS5084837.688245458IPR002913START domain
SuperFamilySSF559612.33E-31246455No hitNo description
CDDcd088751.81E-110249454No hitNo description
SMARTSM002345.0E-66254475IPR002913START domain
PfamPF018522.6E-49255454IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-5350440IPR023393START-like domain
SuperFamilySSF559611.03E-23459638No hitNo description
SuperFamilySSF559611.03E-23675714No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MFESHHHMFD MIPKNSDNDL GITGSRDDDF ETKSTAEITT ENALEEELQD PNQRPNKKKR  60
YHRHTQRQIQ ELESFFKECP HPDDKQRKEL SRELNLEPLQ VKFWFQNKRT QMKAQHERHE  120
NQLLKSDNDK LRAENNRYKD ALNNATCPNC GGPASIGEMS FDEQHLRIEN VRLREEIDRI  180
SAIAAKYVGK PLANPSFPSL TSSHIPSRTL DLEVGNFGTH HHNQNGFATE MYGTNDILRS  240
VSISSEVDKP MIVELAVAAM EELVRMAQTH DPLWVTSENS GEILNEDEYF RTFPRGIGPK  300
PLGLRSEASR ESTVVIMNHI NLVEILMDVN QWSCVFCGIV SRALTLEVLS TGVAGNYNGA  360
LQVMTSEFQV PSPLVPTREN YFVRYCKQHS DGIWAVVDVS LDSLRPSPIT RSRRRPSGCL  420
IQELPNGYSK VTWVEHVEVD DRSVHNMYKP LVDTVITSPE GRKSMLKLAE RMVMSFCSGV  480
GASTAHAWTT LSATGSDDVR VMTRKSMDDP GRPPGIVLSA ATSFWIPVAP KRVFDFLRDE  540
NSRSEWDILS NGGLVQEMAH IANGRDPGNC VSLLRVNSGN TGQSNMLILQ ESCTDASGSY  600
VIYAPVDIMA MNVVLSGGDP DYVALLPSGF AILPDGSVMV GGGKGGTGTG TGTGGDQSGN  660
DQEVAVAATN ESSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV ERIKSAVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA57G00375
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873301.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020873302.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A3P6ADA30.0A0A3P6ADA3_BRACM; Uncharacterized protein
STRINGXP_010439429.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]