PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA57G00357
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 706aa    MW: 78448.5 Da    PI: 6.4597
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA57G00357genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.6e-19313412198
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+k l+ sd+++ grlvlpkk+ae++  +++++e++ l+++d+ g+ W++++++  +++s++yvl+ G     +  +L++gD+v+F++++  e++l ++
  AA57G00357 313 FEKMLSASDTGRIGRLVLPKKCAEAFlpKISHPEGMPLKVQDSLGKDWTFQFRFwpNNNSRMYVLE-GVTACMQNMQLQAGDTVIFSRSD-PEEKLIMG 409
                 89**************************8889999*****************9989999999***9.********************654.55556666 PP

                 EE- CS
          B3  96 vfr 98 
                 +++
  AA57G00357 410 FRK 412
                 554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-28304416IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.05E-18310412IPR015300DNA-binding pseudobarrel domain
CDDcd100176.11E-21311412No hitNo description
PfamPF023628.2E-16313412IPR003340B3 DNA binding domain
PROSITE profilePS5086310.814313414IPR003340B3 DNA binding domain
SMARTSM010194.4E-16313413IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MSSPSSSSMS SSLSSRFCFN NGCSEFKLDH CRPGWRLRTG DFADLCDRCA SAYEHGMFCD  60
IFHIKASGWR CCESCGKHSM QRIHCGCIVS ASAFMLLDAG GVQCMACARK KVVLFTDFSG  120
KNWSYLTGPN QITCRPPTLL GPSVLHNCGD IYEFSQPTSK DVLCSLEKRG VDDLMAKLIS  180
ENSKSHTRPN FKFPSCPNLN VYPPLTSFND GPFETQLTLP VPITTPIETN GHSRLDRSNL  240
LHAPSSSPLN YLHNDLNGGA VPLCESESQS LRPHLEAQAK YQVVPRYWPS VPYNSQDLQN  300
LDKESKSIIT PLFEKMLSAS DTGRIGRLVL PKKCAEAFLP KISHPEGMPL KVQDSLGKDW  360
TFQFRFWPNN NSRMYVLEGV TACMQNMQLQ AGDTVIFSRS DPEEKLIMGF RKATVAQSSE  420
QVEPGDPHSP SRVHNSAYIA KETLGVEFST GKRSSTMNLN SKRQKVEKGD LTELKLTWEE  480
AQGFLLPPPN FTPSIIVIDG IEFEEYEDGP IIGKPIVSDT DDTSFKPTCS ADKELEPDQN  540
EKEAMEEVEE LPTSTKTTPK HPRHKSGCTC IVCIQFPSGR GPKHEQCCSC AVCETVKRRT  600
HSMLLRRDKS RIEEETVHKE LQSQGNSSAS PLKGQIDLNI QPEKDEETLS GSEVSTKTRF  660
MYLNATMKSS FDSPSSSTAY NQTDKEDEGI YRPNTGAEDS KSPAPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C8e-522934163126B3 domain-containing transcription repressor VAL1
5yzz_C8e-522934163126B3 domain-containing transcription repressor VAL1
5z00_C8e-522934163126B3 domain-containing transcription repressor VAL1
5z00_G8e-522934163126B3 domain-containing transcription repressor VAL1
5z00_K8e-522934163126B3 domain-containing transcription repressor VAL1
5z00_M8e-522934163126B3 domain-containing transcription repressor VAL1
6j9a_A8e-522934164127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1596600KRRTH
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA57G00357
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0322984e-44KF032298.1 Leavenworthia alabamica pop-variant Russellville self-incompatibility gene locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005764.10.0LOW QUALITY PROTEIN: B3 domain-containing transcription factor VAL3
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLV4MIN20.0V4MIN2_EUTSA; Uncharacterized protein
STRINGBostr.10689s0100.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3