PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA57G00239
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family FAR1
Protein Properties Length: 773aa    MW: 89604 Da    PI: 7.002
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA57G00239genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.71.7e-2241143289
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                 fY+eYAk++GF+  +++s++s+ +g++++++fvCs+ g+++ ++ +               +++ r+++++ +t+Cka+++vk+++dg+w v +l +eH
  AA57G00239  41 FYKEYAKSIGFTAIVKASRRSRITGKFIDAKFVCSRCGSKKIDNVEktkdttdtfnnisktRKRGRTNHSSLKTDCKACFHVKRRQDGRWIVRSLIKEH 139
                 9**************************************99887777899********9988888889999**************************** PP

        FAR1  86 nHel 89 
                 nHe 
  AA57G00239 140 NHET 143
                 **95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-2041143IPR004330FAR1 DNA binding domain
PfamPF105511.1E-21250340IPR018289MULE transposase domain
PROSITE profilePS5096610.769521558IPR007527Zinc finger, SWIM-type
PfamPF044343.9E-6533556IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-5533560IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MSSRECNDLQ IADQTTNLNT MDELEIHEGK EFESKEEAFM FYKEYAKSIG FTAIVKASRR  60
SRITGKFIDA KFVCSRCGSK KIDNVEKTKD TTDTFNNISK TRKRGRTNHS SLKTDCKACF  120
HVKRRQDGRW IVRSLIKEHN HETMKLNQEM EVENCSKVKG KQILISALRE SGGRKKLEKE  180
NGGNKSELSS RKVLALEDGD VESLLKFFAD MQEENPFFFY AVDLSEDQRL RNVFWVDAKS  240
RLDYTCFNDV LSVDTTFIKN EYKLPLVCFN GVNHHGQGLV LGSGLLRDES KSGFIWLFRA  300
WLKAMNGQQP RVILTKHDQM IKEAVLEAFP CSRHCFYMWD TLGLMPEKLG KSFLNEISDV  360
IHGSCESDEF EEKFWEVVDK FQIRSNPWIQ SLYTDREYWI PVYIKDVSLA GMSTTQRLDS  420
VFDKYIQRKT TLKGYLDQYK RMIHERYEEE EKAEIETLHK QPGLKSPSPF GKQMASMYTS  480
EIFKKFQVEV LGVVACHPKK ESEIGVKKTF RVQDYEQNRG YVVVLSSDES SDVVCSCRLF  540
EFNGFLCRHA MIVLQMSGEL RIPSKYVLKR WTKEAKTPKN REVIGTEIST VQNKAQRYAD  600
LCLRSLKLSE EASLSEESYN AMVNVLDEAF KKCENANLVI QNVEESDPVL AQDHQEDEIT  660
FEMNKDVNVS NMEHSLQEVL SIWKAATSQE HSNRYSILDA YLNSQQIPHE MVQEMSFAAW  720
TNEHNSLKPP WILYYPSRYT LSIYVENFDR NNLVSDQKLC QVVLTSMKGC KRC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA57G00239
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010434337.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2
RefseqXP_019086870.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2
TrEMBLR0GY700.0R0GY70_9BRAS; Uncharacterized protein
STRINGCagra.2564s0022.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.20.0FAR1-related sequence 1