PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA57G00153 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 33000 Da PI: 8.2249 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.2 | 1.9e-18 | 77 | 123 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT +Ed +l+++v+q+G + W+ Ia++++ gR +kqc++rw+++l AA57G00153 77 KGQWTVDEDRILINLVEQYGLRKWSHIAHMLP-GRIGKQCRERWHNHL 123 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.5e-17 | 129 | 171 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + W++eEd l++ +k+ G++ W+ Ia++++ gRt++++k++w+ AA57G00153 129 KETWSEEEDRVLIEFHKEIGNK-WAEIAKKLP-GRTENSIKNHWN 171 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.967 | 72 | 127 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.55E-32 | 75 | 170 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-17 | 76 | 125 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-26 | 78 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.64E-15 | 80 | 123 | No hit | No description |
Pfam | PF13921 | 1.4E-19 | 80 | 138 | No hit | No description |
PROSITE profile | PS51294 | 21.121 | 128 | 178 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-16 | 128 | 176 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-22 | 129 | 177 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.19E-12 | 131 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 283 aa Download sequence Send to blast |
MGCDHNNNNM MMMMKMMPYD NYGPLEMIKP MNFVMADEVS CVSAEIDLCN KAKTSKPFLT 60 RKTMSFPKDK KKSTLVKGQW TVDEDRILIN LVEQYGLRKW SHIAHMLPGR IGKQCRERWH 120 NHLRPDIKKE TWSEEEDRVL IEFHKEIGNK WAEIAKKLPG RTENSIKNHW NATKRRQFSK 180 RKCRSKFPGA SLLQDYIKSL NLGASSSSLN SSRGRRKKKK KESLVVVAEE EEEEEEERIV 240 PECVLFSDEF GFNEKLLEEG CCIDSLLDDL PHHDHMEAFV HGI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-45 | 75 | 178 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-44 | 75 | 178 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-44 | 75 | 178 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-45 | 75 | 178 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-45 | 75 | 178 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 214 | 220 | RRKKKKK |
2 | 214 | 221 | RRKKKKKE |
3 | 215 | 221 | RKKKKKE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA57G00153 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285344.1 | 1e-139 | transcription factor MYB98 | ||||
Swissprot | Q9S7L2 | 1e-135 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | R0F8H6 | 1e-138 | R0F8H6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4306s0015.1.p | 1e-138 | (Capsella grandiflora) | ||||
STRING | XP_006285344.1 | 1e-138 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5869 | 28 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-110 | myb domain protein 98 |
Publications ? help Back to Top | |||
---|---|---|---|
|