PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA57G00120
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TCP
Protein Properties Length: 369aa    MW: 41916.1 Da    PI: 7.1891
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA57G00120genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.98.9e-39501872132
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..kaaksaa. 95 
                  g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk+ieWL+++a+ +i el+ ++++ +++    +++++++++n++++  ++++++  
  AA57G00120  50 SGGKDRHSKVWTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAIEWLIKAAQDSISELPILNTTFPNDQetPQNQNQNQNQNQTIAttNSMSKSGc 148
                 689**********************************************************99855555445336666666666666668855555552 PP

         TCP  96 .kskksqksaasalnlak.esrakarararertrekmri 132
                  ++++++k+++  l+l++ e r kar+rarert+++   
  AA57G00120 149 sSNSDTSKNSSGGLSLSRsELRDKARERARERTAKERLH 187
                 3444445555567888888999*********99987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-3751184IPR005333Transcription factor, TCP
PROSITE profilePS5136930.86552110IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.826167185IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MFNEIEDLMK KNNNNSGNVV VDDDDKNGSS NRLSRWHHNS SRIIRVSRAS GGKDRHSKVW  60
TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAIEWLI KAAQDSISEL PILNTTFPND  120
QETPQNQNQN QNQNQTIATT NSMSKSGCSS NSDTSKNSSG GLSLSRSELR DKARERARER  180
TAKERLHDDD HHHHQDHHNH HHQDHNHHHH TSFTELLTAG RQWIPTSSQH PPMEYLINQN  240
QFPIQTFMSD DEHHHHHHDH HHDQHQELSF VPEHLISSEG GGGGGGFNLD FNMSSSSGYN  300
RGTLQSNSTN NQSFLTNLQN GNGNGGGGAQ FLFGALPVEN HNHHHHQHQF QIYYENGCRN  360
SDQKGKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2457111155Putative transcription factor PCF6
5zkt_B3e-2457111155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA57G00120
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3672703e-71AF367270.1 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds.
GenBankAF3672923e-71AF367292.1 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds.
GenBankAL0217103e-71AL021710.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F28J12 (ESSAII project).
GenBankAL1615483e-71AL161548.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 48.
GenBankAY1021413e-71AY102141.1 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds.
GenBankCP0026873e-71CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599182.11e-136PREDICTED: transcription factor TCP2-like
SwissprotQ93V431e-131TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A1J3I8Y01e-137A0A1J3I8Y0_NOCCA; Transcription factor TCP2
STRINGfgenesh2_kg.7__2455__AT4G18390.11e-136(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-52TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]