PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA57G00042 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 231aa MW: 26820.8 Da PI: 10.0317 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.5 | 1.5e-28 | 131 | 180 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt++LH++Fv+av+ LGG+++AtPk++lelm+v++Ltl+hvkSHLQ AA57G00042 131 PRMRWTTTLHSHFVHAVQLLGGHQRATPKSVLELMDVQDLTLAHVKSHLQ 180 9************************************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.23E-13 | 128 | 181 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 129 | 180 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.7E-21 | 131 | 182 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-5 | 132 | 180 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MELFPSQPDL FLHNNRTRRQ ESFSLSQDQD QEMRLGFMSK ASDSNRSSQN EEEYSLNQEL 60 VKRKSSVSGV SSVYKNESFD YYSLTGQQRD RRLITNPNYN LDHHHHHRRI QEHKPSSSPA 120 RFTARRGVRA PRMRWTTTLH SHFVHAVQLL GGHQRATPKS VLELMDVQDL TLAHVKSHLQ 180 VIINFHYLMY RTIKSTEKPT TSSGQSDICE NGSHGSNVRQ GRDLQSVWNY S |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-13 | 132 | 180 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-13 | 132 | 180 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-13 | 132 | 180 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-13 | 132 | 180 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-13 | 132 | 180 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-13 | 132 | 180 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-13 | 132 | 180 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-13 | 132 | 180 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-13 | 132 | 180 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-13 | 132 | 180 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-13 | 132 | 180 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-13 | 132 | 180 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA57G00042 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353455 | 4e-60 | AK353455.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-31-C13. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006284129.1 | 3e-75 | probable transcription factor KAN3 | ||||
Swissprot | Q941I2 | 3e-72 | KAN3_ARATH; Probable transcription factor KAN3 | ||||
TrEMBL | A0A087G0H4 | 6e-77 | A0A087G0H4_ARAAL; Uncharacterized protein | ||||
STRING | A0A087G0H4 | 1e-77 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13984 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17695.1 | 4e-68 | G2-like family protein |