PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA57G00030
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GATA
Protein Properties Length: 505aa    MW: 56585.8 Da    PI: 7.9591
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA57G00030genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA504e-16741135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  AA57G00030  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-11545No hitNo description
CDDcd002023.70E-16661No hitNo description
Gene3DG3DSA:3.30.50.102.1E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003206.5E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139195.6E-9262359IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RPDGDDTEDH  60
RFQRINKTKE TKMLKRKANQ ENVFIKSPVL EFSNGFKKAV DEDHASNRSS SGSAISNSES  120
CAQFSSVDGS PSQSNAWDTT FPCKKRTCVG RPKTSSVEKL TKDLYTILQE QQSSCLSVSS  180
QEDLLFENEM SMVSVEIGHG SVLMRHPHFG SREEESEASS LSVENKPSIS EAYSHSVKRV  240
EIGEKKGQEC GGQAIKQEQI KRNKSQTERV QALGSHSSPF CNIELKDVFN FDEFIEQFTE  300
EEQKKLMKLL PQIDSVNLPD SLRMMFESAQ FKDNFPLFQK LIADGIFEMS TSSGAHKLED  360
IRSLKKLALC NFNKSRLVES YNMFNEQGKK GTIESVTTMT SRSSNPIVPK NIVTIKRQCE  420
NQTQFMSESR GLMRSPKRVL KMKGSHESNK EMIRNNVTCF NPRSLASVFA QEGVSEGNCS  480
SDQDLILVDL PSNGSFPQAE LLHQL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA57G00030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874908.10.0GATA transcription factor 26
SwissprotQ8W4H10.0GAT26_ARATH; GATA transcription factor 26
TrEMBLD7M9I00.0D7M9I0_ARALL; Zinc finger family protein
STRINGBostr.30275s0218.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.10.0GATA transcription factor 26