PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA57G00021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ERF | ||||||||
Protein Properties | Length: 320aa MW: 35840.9 Da PI: 4.9481 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.3 | 5.9e-21 | 183 | 233 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g +r++lg+f+ta eAa+a+++a+ +l+g AA57G00021 183 HYRGVRQRP-WGKFAAEIRDPNKRG--TRVWLGTFDTAIEAARAYDQAAFRLRG 233 7********.**********96655..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.9E-33 | 182 | 242 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.17E-32 | 183 | 241 | No hit | No description |
PROSITE profile | PS51032 | 24.408 | 183 | 241 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-15 | 183 | 233 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-38 | 183 | 247 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 183 | 243 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.0E-11 | 184 | 195 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-11 | 207 | 223 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MATPNETSAL FLIKKHLLDE FSPLSNVTEN RWMIGSAASE SSSEFSFFGS SNHDFPPFDQ 60 SGFDFSNFET KPECNDLETS SFMDFIANSF KFESDVSDSA NKSLTQFDTE VKTEFLPETN 120 DSFTFHSNPE DVSDLALQSS RKPPLKIATP NRTGWIQFAT GKPTPQLAGP SQRGPVVTEE 180 KRHYRGVRQR PWGKFAAEIR DPNKRGTRVW LGTFDTAIEA ARAYDQAAFR LRGSKAILNF 240 PLEVERWNPR AEDGDKKRKR EGEVAEAEAV AEKVSKTGEG HDVKVPSAID EWDLTELLNM 300 PLLSPLSPHP PFGYPQLTVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-29 | 182 | 244 | 4 | 66 | ATERF1 |
3gcc_A | 1e-29 | 182 | 244 | 4 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00437 | DAP | Transfer from AT4G17490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA57G00021 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB008316 | 2e-50 | AB008316.1 Arabidopsis thaliana ERF-6 mRNA for extracellular signal-regulated factor, complete cds. | |||
GenBank | AB013301 | 2e-50 | AB013301.1 Arabidopsis thaliana AtERF6 mRNA for ethylene responsive element binding factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002868059.1 | 1e-119 | ethylene-responsive transcription factor 6 | ||||
Refseq | XP_024004766.1 | 1e-116 | ethylene-responsive transcription factor 6 | ||||
Swissprot | Q8VZ91 | 1e-116 | EF103_ARATH; Ethylene-responsive transcription factor 6 | ||||
TrEMBL | A0A1J3GYH1 | 1e-135 | A0A1J3GYH1_NOCCA; Ethylene-responsive transcription factor 6 | ||||
STRING | XP_006414222.1 | 1e-120 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17490.1 | 1e-100 | ethylene responsive element binding factor 6 |