PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA56G00017
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 320aa    MW: 35602.4 Da    PI: 6.6021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA56G00017genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.47.3e-1582133155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P++    + K + a+i+  A+++Ik+L+
  AA56G00017  82 QRMTHIAVERNRRRQMNQHLSVLRSLMPQP---FALKGDQASIVGGAIDFIKELE 133
                 79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.5E-1380135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1580146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.42E-1380136No hitNo description
PROSITE profilePS5088815.49781132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-1282133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-1087138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTLEALSSNG LLNFLLSEAT LSPTSFKSFT VPSPEDDVIL SKINTITPAV VSEQEPPPAG  60
RGKKRRRRKA RVCKNEEEAE NQRMTHIAVE RNRRRQMNQH LSVLRSLMPQ PFALKGDQAS  120
IVGGAIDFIK ELEHQLLSLE AQKLQKTNLN QTITSSTSQD SNIEPENSLS LSQFFLHSYD  180
PNQENKNCST TSLKTAMEDL EVTLIETHAN IRILSRRRGF RWNTVASGGP PPRLSKLVAA  240
IQTLSLSILH LSVTTLDTSA IYSISTKVEE NCQLNSVDDI ARAVLHMLSV IEDEQPFCCD  300
SMPDLPFDVS LNHTNATHSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16268KKRRRRK
26368KRRRRK
38293RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA56G00017
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101500.11e-158PREDICTED: transcription factor bHLH71-like
RefseqXP_013693104.11e-158transcription factor bHLH71
SwissprotQ56XR01e-150BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A087GNJ21e-160A0A087GNJ2_ARAAL; Uncharacterized protein
STRINGA0A087GNJ21e-160(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103892535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.11e-141beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]