PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA55G00059
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MIKC_MADS
Protein Properties Length: 385aa    MW: 44401.4 Da    PI: 9.038
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA55G00059genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.38.4e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ien + rqvtfskRr g+lKKA+ELSvLCda+va i+fs++g+lye++s
  AA55G00059  9 KKIENVTSRQVTFSKRRSGLLKKAHELSVLCDAQVAAIVFSQSGRLYEFCS 59
                68***********************************************96 PP
2SRF-TF88.34.1e-28209259151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                 k+ien + rqvtf+kRrng++KKA+ELS+LCda++a iifs++g+lye+s+
  AA55G00059 209 KKIENVTSRQVTFCKRRNGLFKKAHELSILCDAQIAAIIFSQKGRLYEFST 259
                 68***********************************************96 PP
3K-box61.72.9e-2182168894
       K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                 s+ e+  + l++e++ + ++i+ L+  +R+l+G++L+s+s++eLq++ +q+eksl+ +Rs+K el+ +q+e+l+ ke el +e + L
  AA55G00059  82 SQVEQYLQGLKNEMNTMVNKINLLEVHNRKLMGQGLGSCSVEELQEMDTQIEKSLRIVRSRKAELYADQLEKLKAKEIELLNERMLL 168
                 467788999****************999****************************************************9998876 PP
4K-box523.1e-182863561282
       K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                 +  ++l+++ + + ++ie L+  +R+l+G++L+s+s++eLq + +q+eksl  +Rs+K +l+ +++e+l+ 
  AA55G00059 286 QYLQELKNQRSTMMRKIELLEVHHRKLMGQNLGSCSVEELQAIATQIEKSLHLVRSRKAKLYEDEVEKLKA 356
                 5578999999**********************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.357161IPR002100Transcription factor, MADS-box
CDDcd002651.37E-39376No hitNo description
SuperFamilySSF554558.37E-32388IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-29323IPR002100Transcription factor, MADS-box
PfamPF003194.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-293859IPR002100Transcription factor, MADS-box
PfamPF014865.1E-2088170IPR002487Transcription factor, K-box
PROSITE profilePS5129712.43288182IPR002487Transcription factor, K-box
SMARTSM004323.2E-39201260IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.188201261IPR002100Transcription factor, MADS-box
CDDcd002655.77E-40203275No hitNo description
SuperFamilySSF554556.15E-30203281IPR002100Transcription factor, MADS-box
PfamPF003194.3E-25210257IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.61288375IPR002487Transcription factor, K-box
PfamPF014862.8E-17289357IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MVRGKIEIKK IENVTSRQVT FSKRRSGLLK KAHELSVLCD AQVAAIVFSQ SGRLYEFCST  60
EMQKMMEMYC KYSEDSCVAE KSQVEQYLQG LKNEMNTMVN KINLLEVHNR KLMGQGLGSC  120
SVEELQEMDT QIEKSLRIVR SRKAELYADQ LEKLKAKEIE LLNERMLLCE GEREKMVLAM  180
KSNNGGDESS SNGCREGFVG MVRGKIEIKK IENVTSRQVT FCKRRNGLFK KAHELSILCD  240
AQIAAIIFSQ KGRLYEFSTS DTDKLLERYG KYRGDYIVAE RPRLHQYLQE LKNQRSTMMR  300
KIELLEVHHR KLMGQNLGSC SVEELQAIAT QIEKSLHLVR SRKAKLYEDE VEKLKANVGE  360
KPIMLGNREK ERDDVETDLF IGFRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-191272174MEF2 CHIMERA
6byy_B6e-191272174MEF2 CHIMERA
6byy_C6e-191272174MEF2 CHIMERA
6byy_D6e-191272174MEF2 CHIMERA
6bz1_A7e-191272174MEF2 CHIMERA
6bz1_B7e-191272174MEF2 CHIMERA
6bz1_C7e-191272174MEF2 CHIMERA
6bz1_D7e-191272174MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA55G00059
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442695.14e-88PREDICTED: MADS-box protein AGL71-like isoform X2
RefseqXP_010442697.14e-88PREDICTED: MADS-box protein AGL71-like isoform X2
SwissprotQ9LT934e-84AGL71_ARATH; MADS-box protein AGL71
TrEMBLR0GS212e-84R0GS21_9BRAS; Uncharacterized protein
STRINGXP_010442695.12e-87(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.29e-87MIKC_MADS family protein