PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA55G00006
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 622aa    MW: 67190.8 Da    PI: 6.5145
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA55G00006genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.95.5e-1122456222374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 +++++e+A+a+++g++  a+++L+r+s+  +p++++ q+l+  ++ AL++rl+       ++ p+se      +++l +++l++e+sP++k+++++aN 
  AA55G00006 245 RQTIMEVATAIAEGKTDIASEILTRISQSPNPKRNSEQKLVELMAAALRSRLNP----AENSTPVSEL---YGKDHLRSTQLLYELSPCFKLGFMAANL 336
                 6899*************************************************9....4444444444...49************************** PP

        GRAS 101 aIleavege...ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrled 188
                 aIle++  +   +++H+iDfdi++G+Q+ +Ll+aL++R   ++pp ++iT+v+++  g      ++e+l+++g+ L+++ ++lg++++fnv+++ rl+d
  AA55G00006 337 AILESTLDAtsnNALHVIDFDIGKGGQYENLLHALSTRHsgKKPPVVKITAVANKIDGymvadgNEERLKTVGDMLSQLGNRLGITLKFNVVTTLRLSD 435
                 ****9866555599*************************77779**********7777999999***************************9999**** PP

        GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                 l+ e+L ++p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P+vv++veqe++ n+++Fl r++e++ +y al+ds+e+++p+ +++r+kvE+
  AA55G00006 436 LSRESLGCDPDEPLAVNLAFKLYRVPDESVCIENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGALLDSVESTVPSSNSDRSKVEE 534
                 *************************************************************************************************** PP

        GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +gr++ nvvaceg +r+er+e ++kWr+r+++aGF+ +++sek+a+++k+ l++ +    g++v+ee+g +++gW++r+L ++SaWr
  AA55G00006 535 G-IGRKLANVVACEGLDRIERCEVFGKWRMRMSMAGFELMTVSEKIAESMKSRLSNGNrvHSGFTVKEENGGVCFGWMGRTLAVASAWR 622
                 *.**************************************************99987777899*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.095218600IPR005202Transcription factor GRAS
PfamPF035141.9E-109245622IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MAYGFSGGGG GGPEFFGVGG RSMTGGPGNN NSQISPPGIF LDQIGNRVSG IHGIAGKRTL  60
ADFQAAQQHQ PFHNQAALNA FLLRSVKPRT FQNLPSPISP LPPQTIDLTG VNDMAFLGGS  120
SQRYGLPLLP HLRSQHVHQT QTDLGHQMGI RSVNSTMSNG SCTTDPAQSE NMVNSLRELE  180
KQLLDDDDSD ALGDDDVSVI TNTNSDWSET IQSLVKPNPV SPSSSSSSST SSSPSTTSTM  240
PVCTRQTIME VATAIAEGKT DIASEILTRI SQSPNPKRNS EQKLVELMAA ALRSRLNPAE  300
NSTPVSELYG KDHLRSTQLL YELSPCFKLG FMAANLAILE STLDATSNNA LHVIDFDIGK  360
GGQYENLLHA LSTRHSGKKP PVVKITAVAN KIDGYMVADG NEERLKTVGD MLSQLGNRLG  420
ITLKFNVVTT LRLSDLSRES LGCDPDEPLA VNLAFKLYRV PDESVCIENP RDELLRRVKG  480
LKPRVVTLVE QEMNSNTAPF LGRVSESCAC YGALLDSVES TVPSSNSDRS KVEEGIGRKL  540
ANVVACEGLD RIERCEVFGK WRMRMSMAGF ELMTVSEKIA ESMKSRLSNG NRVHSGFTVK  600
EENGGVCFGW MGRTLAVASA WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-3324862291473Protein SHORT-ROOT
5b3h_B1e-3324862237419Protein SHORT-ROOT
5b3h_E1e-3324862237419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA55G00006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401816.10.0scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLV4LHQ50.0V4LHQ5_EUTSA; Uncharacterized protein
STRINGXP_006401816.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8