PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA54G00421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | TCP | ||||||||
Protein Properties | Length: 368aa MW: 40561.2 Da PI: 9.6383 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 120.3 | 2.3e-37 | 44 | 188 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec...eaesssssasnsssg.... 88 g+kdrhsk+ T++g+RdRR+Rls+++a++f+dLqd+LG+d++sk++eWL+++a +i +l++ +++++++ + ++ + AA54G00421 44 SGGKDRHSKVLTSKGLRDRRIRLSVSTAIQFYDLQDRLGLDQPSKAVEWLINAASDSISDLPSInpnfsETNHNNNGgfgDFNEI---------Rdfnq 133 689***********************************************************99544431111111133322222.........23333 PP TCP 89 ......kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136 +++ + +s+ s++s+a+ l+l++ e r kar+rarert++++ +++++ AA54G00421 134 nqtlslSKSGGSSTSETSKTSSAAGLSLSRtEIRGKARERARERTAKEKEKDHQN 188 44455545555557777888888899999999*************9999888665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.7E-37 | 45 | 183 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.369 | 46 | 104 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.766 | 164 | 182 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MEEVDEIEPS RKLQKLSNIT EMTPNSRIRD WTPSSRIIRV SRASGGKDRH SKVLTSKGLR 60 DRRIRLSVST AIQFYDLQDR LGLDQPSKAV EWLINAASDS ISDLPSINPN FSETNHNNNG 120 GFGDFNEIRD FNQNQTLSLS KSGGSSTSET SKTSSAAGLS LSRTEIRGKA RERARERTAK 180 EKEKDHQNTI ESSFTQLLTG GFHQTGSNGS TQTGLTRQWN GSGSGSGSGT DYFNPVLPHI 240 PQFTISNDQN RQQMNQEFSF VPDLTTPVTD YNTLNFGISS SSCCSSRSAI NGGYNSRGTL 300 QSNTTSFLFN NNIHQRSSSS SSSSSSPSFF MAAPSSLEEH SQNLQTGFDG RLFMYGNRSS 360 ENKGKERR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-21 | 51 | 105 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-21 | 51 | 105 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00169 | DAP | Transfer from AT1G30210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA54G00421 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_564351.1 | 1e-103 | TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 | ||||
Refseq | NP_849730.1 | 1e-103 | TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 | ||||
Swissprot | Q9C758 | 1e-104 | TCP24_ARATH; Transcription factor TCP24 | ||||
TrEMBL | D7KES0 | 1e-102 | D7KES0_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.1__3195__AT1G30210.2 | 1e-102 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13840 | 17 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 1e-78 | TCP family protein |
Publications ? help Back to Top | |||
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