PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA54G00241

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Nin-like

Protein Properties

Length: 934aa MW: 102835 Da PI: 5.6151

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA54G00241	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.8e-29	577	627	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ AA54G00241 577 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 627 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.757	566	647	IPR003035	RWP-RK domain
Pfam	PF02042	7.1E-26	579	627	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.2E-23	835	923	No hit	No description
Pfam	PF00564	2.3E-19	838	919	IPR000270	PB1 domain
PROSITE profile	PS51745	26.856	838	920	IPR000270	PB1 domain
SMART	SM00666	6.5E-28	838	920	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.3E-27	838	920	No hit	No description
CDD	cd06407	1.12E-33	839	919	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 934 aa Download sequence Send to blast
MCEPEDDTTR NGVITSVSRS REIMMDVDDL DLDGSWPLDQ ISYLSSANRM MSPMFVTSSS 60 EQPCSPLWAF SDGGGNGIHG NGGGDDEKRS AASVVPSFRF AEYPLFLPLS NSLKSLEIAD 120 SSPSVAESNA EKNNHIQFPS PLMGLVPPPN TDNYCVWAPV RKNGRNLLTT LGQPFVLNPN 180 GNGLNQYRMI SLTYMFSVDS ESDIELGLPG RVFRQKLPEW TPNVQYYSSK EFSRLDHALH 240 YNVRGTLALP VFHPSGQSCI GVVELIMTSE KIHYAPEVDR VCKALEAVNL KSSEILDHQP 300 AQICNESRQN ALAEILEVLT VVCETHNLPL AQTWVPCQHG SVLANGGGLK KNCTSFDGSC 360 MGQICMSTTD MACYVVDFHV WGFRDACLEH HLQKGQGVAG RAFLNGGSCF CRDITKFCKT 420 QYPLVHYALM FKLTTCFAIS LQSSYTGDDS YILEFFLPST ITDEHEQDSL LGSLLVTMKE 480 HFQSLRVASG VDFGEDDDKL SFEIIQALPD QKINSKIESI RVPFSGFKAN AREPPLNPQP 540 AVLTSDPVNE KSNNVATTVN GVAKEKKKTE KKRGKTEKTI SLDVLQQYFT GSLKDAAKSL 600 GVCPTTMKRI CRQHGISRWP SRKIKKVNRS ITKLKRVIES VQGTDGGLDL TTMAVGSIPW 660 THSQTPPQPL NSPNGHKPSE LPNTNNSPNH WSSDHSPQEP NGSPELPSNG YKSAGTPTSH 720 GSCDGNQLEE TKTLNQDPLF TVGGSPGLMC PPYSRELDVS ATSFSLQNRL LGSIDHFRGM 780 PIADVGSSKD LRNLCSSTAF EDKFPDSNWM SNENSSNNIY VPALEEPLAT TRDPNTRTVT 840 IKASYKEDII RFRISSGSGL MELKDEVAKR LKLDAGIFDI KYLDDDNEWV LIACDADLQE 900 CLEIPRLSRT NIVRLLVHDV TTNLGSSCES TGEL

Sequence ? help Back to Top

Protein Sequence Length: 934 aa Download sequence Send to blast

MCEPEDDTTR NGVITSVSRS REIMMDVDDL DLDGSWPLDQ ISYLSSANRM MSPMFVTSSS  60
EQPCSPLWAF SDGGGNGIHG NGGGDDEKRS AASVVPSFRF AEYPLFLPLS NSLKSLEIAD  120
SSPSVAESNA EKNNHIQFPS PLMGLVPPPN TDNYCVWAPV RKNGRNLLTT LGQPFVLNPN  180
GNGLNQYRMI SLTYMFSVDS ESDIELGLPG RVFRQKLPEW TPNVQYYSSK EFSRLDHALH  240
YNVRGTLALP VFHPSGQSCI GVVELIMTSE KIHYAPEVDR VCKALEAVNL KSSEILDHQP  300
AQICNESRQN ALAEILEVLT VVCETHNLPL AQTWVPCQHG SVLANGGGLK KNCTSFDGSC  360
MGQICMSTTD MACYVVDFHV WGFRDACLEH HLQKGQGVAG RAFLNGGSCF CRDITKFCKT  420
QYPLVHYALM FKLTTCFAIS LQSSYTGDDS YILEFFLPST ITDEHEQDSL LGSLLVTMKE  480
HFQSLRVASG VDFGEDDDKL SFEIIQALPD QKINSKIESI RVPFSGFKAN AREPPLNPQP  540
AVLTSDPVNE KSNNVATTVN GVAKEKKKTE KKRGKTEKTI SLDVLQQYFT GSLKDAAKSL  600
GVCPTTMKRI CRQHGISRWP SRKIKKVNRS ITKLKRVIES VQGTDGGLDL TTMAVGSIPW  660
THSQTPPQPL NSPNGHKPSE LPNTNNSPNH WSSDHSPQEP NGSPELPSNG YKSAGTPTSH  720
GSCDGNQLEE TKTLNQDPLF TVGGSPGLMC PPYSRELDVS ATSFSLQNRL LGSIDHFRGM  780
PIADVGSSKD LRNLCSSTAF EDKFPDSNWM SNENSSNNIY VPALEEPLAT TRDPNTRTVT  840
IKASYKEDII RFRISSGSGL MELKDEVAKR LKLDAGIFDI KYLDDDNEWV LIACDADLQE  900
CLEIPRLSRT NIVRLLVHDV TTNLGSSCES TGEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA54G00241

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006413484.1	0.0	protein NLP7
Refseq	XP_024005488.1	0.0	protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	V4MHY8	0.0	V4MHY8_EUTSA; Uncharacterized protein
STRING	XP_006413484.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]