PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA54G00238

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Dof

Protein Properties

Length: 304aa MW: 33866.4 Da PI: 7.6274

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA54G00238	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	2.9e-39	55	115	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++al+cprC+st+tkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s+ AA54G00238 55 KDQALNCPRCNSTKTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 115 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-30	53	113	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.9E-33	56	113	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.854	59	113	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	61	97	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MDTAQWPQEI VVKPLDEIVT NTCPKQPQTQ LQPQRSETVG AGGGGEMMRK ARPEKDQALN 60 CPRCNSTKTK FCYYNNYSLT QPRYFCKGCR RYWTEGGSLR NIPVGGGSRK NKRSHHQNHQ 120 TTSNIMLDHH QPPQKKHLSE QLMMSQQGLT SQNPKFLHET TQQDLNLGFS PHGFRSNFTD 180 LIHNIGNSNN NGNSSSFMGF PIHNQDPLTS GNFSIQDHYK PISTTNPTLL GFPLDHQNGF 240 NGGFQGDQDQ EEEERGSRNL FPFDDLKLPV STSSAASISI DINDASAATT SAGYWTGMLS 300 GGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA54G00238

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018469941.1	1e-131	PREDICTED: dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	1e-120	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A087GGG1	1e-126	A0A087GGG1_ARAAL; Uncharacterized protein
STRING	A0A087GGG1	1e-127	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-110	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]