PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA54G00229 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | GRF | ||||||||
Protein Properties | Length: 237aa MW: 26073.8 Da PI: 9.0063 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.5 | 5.5e-24 | 180 | 223 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ep+rCrRtDGKkWRCsr+v++ +k+CErH h++r rsrk++e AA54G00229 180 LEPWRCRRTDGKKWRCSRNVIPEQKYCERHTHKSRPRSRKHVEV 223 69***************************************985 PP | |||||||
2 | QLQ | 38.5 | 3.5e-14 | 112 | 148 | 1 | 35 |
QLQ 1 saFTaaQlqlLksQilAyKyLaa..nqPvPpeLlqai 35 s F+ +Q+q+L++Q +yKy+ + ++PvP+eLl+ AA54G00229 112 SGFSESQFQELERQKNIYKYITSsaHVPVPSELLASF 148 56*******************9999*********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.8E-4 | 112 | 150 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 14.004 | 113 | 150 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.7E-7 | 114 | 145 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.829 | 179 | 223 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-19 | 181 | 222 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGTRAERKEG FGFGVVENSI KDAMVLPHYH QNPSSSSSSS SLCYCFAGGS ISNNHSGVHG 60 DPLFSSNQAY TSSLNDMFCL SGSASSSSVA ADPFFSLTSS GEIGRYMNEK ASGFSESQFQ 120 ELERQKNIYK YITSSAHVPV PSELLASFSK NQINPNSDVV KESSLKLGIA SSASNSSNDL 180 EPWRCRRTDG KKWRCSRNVI PEQKYCERHT HKSRPRSRKH VEVSSSTTTR NDIRFGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA54G00229 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023634790.1 | 3e-87 | growth-regulating factor 8 | ||||
Swissprot | Q9SU44 | 2e-73 | GRF8_ARATH; Growth-regulating factor 8 | ||||
TrEMBL | R0H228 | 3e-80 | R0H228_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1226s0080.1.p | 4e-87 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7836 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24150.1 | 2e-70 | growth-regulating factor 8 |
Publications ? help Back to Top | |||
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