PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA54G00203
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 596aa    MW: 67642.3 Da    PI: 6.426
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA54G00203genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.61.2e-53151421128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lp GfrF+Ptdeel+++yL+ k++g++le+ +vi+evd++k+ePwdLp  + +k++++ew+fF++rd+ky++g+r+nrat+ gyWkatgkd++++s k+
  AA54G00203  15 LPLGFRFRPTDEELINHYLRLKINGRDLEV-RVIPEVDVCKWEPWDLPglSVIKTDDQEWFFFCPRDRKYPSGHRSNRATDIGYWKATGKDRTIKS-KK 111
                 699***************************.99***************6448899999**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++g+kktLvfy+grap+ge+t+W+mheyr+
  AA54G00203 112 IVIGMKKTLVFYRGRAPRGERTNWIMHEYRA 142
                 9****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-6410165IPR003441NAC domain
PROSITE profilePS5100558.68415165IPR003441NAC domain
PfamPF023651.9E-2716141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MTTEAKTTPL SMETLPLGFR FRPTDEELIN HYLRLKINGR DLEVRVIPEV DVCKWEPWDL  60
PGLSVIKTDD QEWFFFCPRD RKYPSGHRSN RATDIGYWKA TGKDRTIKSK KIVIGMKKTL  120
VFYRGRAPRG ERTNWIMHEY RATDKELDGT GPGQNPYVLC RLFHKPGDTF DNTANCDEIE  180
NVNSTPTTTT RCSPDETSSE MAQETATSRV QAVNDNEKCS SDNVKPDDHD LVEENPLVRE  240
IPNLYEPSFT QINDKSIYPA QSSNGGFAAS HIDSMYSSDF GNCDYGLHFQ DGVGVQDVSL  300
TDVLDEVFHN NNESSSQVSV KGKEYVVPSM LHWHGNTVSF ANRGQEVAGT EEFVPASRWV  360
NSHIDNKEVA EIQSSSGSSR TLMPVHSNVF GQYASTSNAN IDNHPEQSSI PVDHNVCPND  420
ISGFTLRSRE NQKNLDFSVD QGTAPRRIRL QIKQPFTNKE RGVDHYEEDE VQSNMSKVVE  480
ENSAKLGAQG TAHRRIRLQT RFRKLPPMLN NIGKDLNYCK EEVNGYKERG EEEERSSSSS  540
RQNHGKLRGR RSLVQCSSLV ILMVVIMVLI GMWKESKDSK FRSLFHQEYS FKGMLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-48616511168NAC domain-containing protein 19
3swm_B2e-48616511168NAC domain-containing protein 19
3swm_C2e-48616511168NAC domain-containing protein 19
3swm_D2e-48616511168NAC domain-containing protein 19
3swp_A2e-48616511168NAC domain-containing protein 19
3swp_B2e-48616511168NAC domain-containing protein 19
3swp_C2e-48616511168NAC domain-containing protein 19
3swp_D2e-48616511168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA54G00203
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893753.20.0NAC domain-containing protein 14
SwissprotB5X5700.0NAC14_ARATH; NAC domain-containing protein 14
TrEMBLA0A1J3DGX30.0A0A1J3DGX3_NOCCA; NAC domain-containing protein 86
STRINGBostr.3359s0059.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.10.0NAC 014