PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA54G00162
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family AP2
Protein Properties Length: 352aa    MW: 40075 Da    PI: 5.3412
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA54G00162genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.3e-192069356
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                y+GVr +k +g+Wv+eIr+    gk++r++lg++ tae+Aa+a++aa+++l+g+
  AA54G00162 20 YRGVRKRK-WGKWVSEIRES---GKKTRIWLGSYETAEMAAAAYDAAALYLRGH 69
                9****999.**********3...467**************************97 PP
2AP262.41e-19201249355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+G+r +k +g+Wv+eIr+p   gk++r++lg+++t+e+Aa+a++aa+++l+g
  AA54G00162 201 YRGIRKRK-WGKWVSEIREP---GKKTRIWLGSYDTPEMAAAAYDAAALYLRG 249
                 9****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.3E-141969IPR001471AP2/ERF domain
SMARTSM003802.3E-311988IPR001471AP2/ERF domain
PROSITE profilePS5103221.4431982IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-271983IPR001471AP2/ERF domain
PRINTSPR003677.7E-102031IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-182072IPR016177DNA-binding domain
CDDcd000185.37E-142051No hitNo description
PRINTSPR003677.7E-104258IPR001471AP2/ERF domain
PROSITE profilePS5103222.761200257IPR001471AP2/ERF domain
PfamPF008472.1E-13200249IPR001471AP2/ERF domain
SMARTSM003807.7E-37200263IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-30200258IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-21201257IPR016177DNA-binding domain
CDDcd000181.46E-19201258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEKNEISQRN QLFSVDQVSY RGVRKRKWGK WVSEIRESGK KTRIWLGSYE TAEMAAAAYD  60
AAALYLRGHG THSGRGTYLN FPEIADSLPR PMSSRAEHVQ AAAQEAALMF KPGRSAEKVL  120
RDYENVGLGR EPVQVGLTPE EIQAINEIPL ESPKMRWMEM EVCDYEDMYR GYFGQYETDE  180
FFEMQQFHQR NHLFSVDQAS YRGIRKRKWG KWVSEIREPG KKTRIWLGSY DTPEMAAAAY  240
DAAALYLRGS GAHLNFPEIA DSLPRPMSSS AEHVQAAAQE AALMFKPGGS LGLGRVGLYS  300
GQIQGIIEFS LDSPKSEDLE VSDYEEMYGR FFGGYNCDDF VEIQQFRSIW DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-15201262668ATERF1
3gcc_A3e-15201262668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA54G00162
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461198.11e-71PREDICTED: ethylene-responsive transcription factor ERF022
RefseqXP_010478800.11e-71PREDICTED: ethylene-responsive transcription factor ERF022
RefseqXP_010499915.11e-71PREDICTED: ethylene-responsive transcription factor ERF022
RefseqXP_019098530.11e-71PREDICTED: ethylene-responsive transcription factor ERF022
SwissprotQ9LQ283e-70ERF22_ARATH; Ethylene-responsive transcription factor ERF022
STRINGBostr.3359s0006.1.p1e-71(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.18e-62ERF family protein