PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G01391
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TALE
Protein Properties Length: 297aa    MW: 32825.7 Da    PI: 6.6604
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G01391genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.61.8e-072462792154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp+++++++L +++gL+ +q+ +WF N+R +
  AA53G01391 246 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 279
                 469*****************************87 PP
2ELK22.72.3e-08200221122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK +L++++++++ ++++E++
  AA53G01391 200 ELKLELKQGFKSRIEDVREEIM 221
                 9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.1E-194084IPR005540KNOX1
PfamPF037908.7E-174283IPR005540KNOX1
SMARTSM012562.9E-997139IPR005541KNOX2
PROSITE profilePS512139.202200220IPR005539ELK domain
PROSITE profilePS5007111.823220283IPR001356Homeobox domain
SuperFamilySSF466894.23E-16222286IPR009057Homeodomain-like
SMARTSM003896.0E-11222287IPR001356Homeobox domain
CDDcd000869.10E-12223284No hitNo description
Gene3DG3DSA:1.10.10.608.0E-25227285IPR009057Homeodomain-like
PfamPF059201.0E-17240279IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MQEAALGMIG VTGGGSSSSG GGGGGDGEGV VVAAAVEQNR QMKGEIATHP MYEQLLAAHV  60
ACLRVATPID QIPIIDAQLS HSHHLLRSYA SAAANVGFSH HHDRHELDNF LLQQHVRVHA  120
VEAVMACREI ENNLHSLTGA TLGEGSGATM SEDEEEIQMD FSSENSGVDF GSGGGHDMTG  180
FGPLLPTESE RSLMERVRQE LKLELKQGFK SRIEDVREEI MRKRRAGKLP GDTTTVLKNW  240
WQQHSKWPYP TEDDKAKLVE ETGLQLKQIN NWFINQRKRN WHNNSHSLTS LKSKRKH
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G01391
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ290731e-179Z29073.1 B.napus hd1 mRNA for homeodomain-containing protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010430375.10.0PREDICTED: homeobox protein knotted-1-like 7
SwissprotQ9FPQ80.0KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A1J3CJC20.0A0A1J3CJC2_NOCCA; Homeobox protein HD1
STRINGXP_010430375.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-180KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]