PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G01384
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 678aa    MW: 75785.2 Da    PI: 7.5391
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G01384genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.78.2e-1342886611374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 lv+lL+ c ea++s++ + +++++ar+ +lasp+g +pm+Rl+ay+ eALa r+ar+++++++ +pp+e +++ ++e+ +al+++++v+Pi+kf h+ta
  AA53G01384 288 LVSLLTGCLEAIRSRNIAVINHFIARMGDLASPRGrTPMTRLIAYYIEALALRVARMWPHIFHVIPPREFERTVEDESGNALRFLNQVTPIPKFIHFTA 386
                 6899*******************************99***********************************99************************* PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 N+++l+a+eg+ervHiiDfdi qGlQWp+++q+LasR+++p+++RiTg+g+    sk+el+etg+rL+ fAe+l++pfef++ v +rled++l++L+vk
  AA53G01384 387 NEMLLRAFEGKERVHIIDFDIRQGLQWPSFFQSLASRSDPPHHVRITGIGE----SKQELNETGDRLHGFAEALNLPFEFHP-VIDRLEDVRLWMLHVK 480
                 ***************************************************....***************************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 +gE++aVn+v+qlh++l + +  +   ++++ l++s++P  +v++eqea+hns+ + +r++++l+yysa+fd+++++lp++s  r+k+E++l+grei+n
  AA53G01384 481 EGESVAVNCVMQLHKTLYDATGAAI--RDFMGLIRSTNPIALVLAEQEAEHNSGHLETRVCNSLKYYSAIFDAMHTNLPTDSLIRVKIEEMLFGREIRN 577
                 *****************88777777..99********************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdg.yrve...eesgslvlgWkdrpLvsvSaWr 374
                 +vaceg++r+erh+ + +Wr++le+ GF+++ +se+++ q k+llr+++   +g ++ve   e+ g ++l W+d+pL++vSaW+
  AA53G01384 578 IVACEGSHRQERHTGFYQWRRMLEQLGFQNLGVSEREVLQSKMLLRMYGasTEGfFNVErrdEDGGGVTLRWSDQPLYTVSAWT 661
                 ************************************************985566999997766678888**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.716262635IPR005202Transcription factor GRAS
PfamPF035142.8E-131288661IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MLAGCSSSTL LSPTRRLRSE APAAAAVVQF ASHHQACHFP MNTQRLDLPC SSFSRKENSS  60
NRQLGRSISL DNKPIEAKTS GCSLKHNIKL PPLTTTRSGG EGFPWNNDNN SSSSSYNNRG  120
KNLKRLAEED ETCLSRAKRT KSESEDHKAL GLGAGFWFEH FTGQNTPAVP FSLTCSGEED  180
RACFLPSEVI SQPLPSNPTW FNSGITKFAG LGDKEVESSR PPAVKEASGS TSASSESQSL  240
RHRIPESTNG SRNPHSHRSA GAGTSEEVNI ININNNNHRN DLQRDFELVS LLTGCLEAIR  300
SRNIAVINHF IARMGDLASP RGRTPMTRLI AYYIEALALR VARMWPHIFH VIPPREFERT  360
VEDESGNALR FLNQVTPIPK FIHFTANEML LRAFEGKERV HIIDFDIRQG LQWPSFFQSL  420
ASRSDPPHHV RITGIGESKQ ELNETGDRLH GFAEALNLPF EFHPVIDRLE DVRLWMLHVK  480
EGESVAVNCV MQLHKTLYDA TGAAIRDFMG LIRSTNPIAL VLAEQEAEHN SGHLETRVCN  540
SLKYYSAIFD AMHTNLPTDS LIRVKIEEML FGREIRNIVA CEGSHRQERH TGFYQWRRML  600
EQLGFQNLGV SEREVLQSKM LLRMYGASTE GFFNVERRDE DGGGVTLRWS DQPLYTVSAW  660
TIGSIGVGGS SSSFSQRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-6829566125378Protein SCARECROW
5b3h_D5e-6829566125378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G01384
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176498.10.0GRAS family transcription factor
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A178W2Y70.0A0A178W2Y7_ARATH; Uncharacterized protein
STRINGAT1G63100.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein