PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G01310
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 311aa    MW: 34433 Da    PI: 8.9467
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G01310genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-19119169256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  AA53G01310 119 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 169
                 59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.45E-17118178No hitNo description
PROSITE profilePS5103223.301119176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-31119177IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22119176IPR016177DNA-binding domain
SMARTSM003801.1E-36119182IPR001471AP2/ERF domain
PfamPF008473.0E-13120169IPR001471AP2/ERF domain
PRINTSPR003673.9E-10120131IPR001471AP2/ERF domain
PRINTSPR003673.9E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEASNDLFQT NFSPKISEIR ASLSQIILGG GSNTLDSIFS LLTPSPSVES PPPPSQLGSS  60
VYLRQRDLLE KFQRTTNNYN PLPPSPLFSS STQHLFQSNP TAAFAAAFAV GRTVKKKKLY  120
RGVRQRHWGK WVAEIRLPQN RMRVWLGTYD TAEAAAYAYD RAAYKLRGEY ARLNFPNLKD  180
PSELLGLGDP AKLIALKTAV DNKIQSICQK VRRERAKKSG KASKKSSECS NSSPEMMNAV  240
NSVESYWMGS GDGFLWNSEN SSPASVTVSE EGAITTAMTT EEEDMVMDTD GFLLARMPSF  300
DPELIWEVLA I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19118176160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-19116176263ATERF1
3gcc_A2e-19116176263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G01310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418501.11e-136PREDICTED: ethylene-responsive transcription factor ERF061 isoform X1
SwissprotQ9C7W21e-117ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLD7KSA81e-128D7KSA8_ARALL; Uncharacterized protein
STRINGXP_010418502.11e-135(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-97ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]