PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G01090
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 320aa    MW: 36240.8 Da    PI: 7.0645
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G01090genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.91.1e-41241361129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhP+deel+++yLk+kv++  +++ ++i +              +k +ekewyfF+ rd+ky+tg r+nratk+gyWkatgkdke+++ +++l
  AA53G01090  24 LPPGFRFHPSDEELITHYLKPKVQNIFFSA-TAIGK--------------AKMGEKEWYFFCVRDRKYPTGLRTNRATKAGYWKATGKDKEIFK-GKSL 106
                 79*********************9988777.44444..............233789**************************************.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129
                 vg+kktLvfykgrapkg kt+Wvmheyrle
  AA53G01090 107 VGMKKTLVFYKGRAPKGLKTNWVMHEYRLE 136
                 ****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-5421160IPR003441NAC domain
PROSITE profilePS5100540.78824160IPR003441NAC domain
PfamPF023651.4E-2925135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0051091Biological Processpositive regulation of sequence-specific DNA binding transcription factor activity
GO:1900057Biological Processpositive regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MENEVTRMGE IVEGEVEDEE QIDLPPGFRF HPSDEELITH YLKPKVQNIF FSATAIGKAK  60
MGEKEWYFFC VRDRKYPTGL RTNRATKAGY WKATGKDKEI FKGKSLVGMK KTLVFYKGRA  120
PKGLKTNWVM HEYRLEGKFA IDNLSKTAKN EWVICRVFQK RADGKKVHIS GLVRIGSGAN  180
QFEPIGLPPL MDSSKYDKNR GEHESFVGAS LSHVTCFSDQ TIEDKSLQAE SKDDFSLPNY  240
GSSSTHVIPN TGSLLYSDSD PLFLQDNSSI LKMLLESEET QFHKNHGFSE NEGRSLHDQN  300
PSGSAGPIEQ DCFWNFKFGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-45151668171NO APICAL MERISTEM PROTEIN
1ut4_B4e-45151668171NO APICAL MERISTEM PROTEIN
1ut7_A4e-45151668171NO APICAL MERISTEM PROTEIN
1ut7_B4e-45151668171NO APICAL MERISTEM PROTEIN
4dul_A4e-45151668171NAC domain-containing protein 19
4dul_B4e-45151668171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G01090
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395312.11e-158NAC domain-containing protein 59
SwissprotQ9LJW31e-148NAC59_ARATH; NAC domain-containing protein 59
TrEMBLA0A1J3IFK01e-158A0A1J3IFK0_NOCCA; Uncharacterized protein
STRINGXP_006395312.11e-158(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.11e-137NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]