PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA53G01081

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

ZF-HD

Protein Properties

Length: 338aa MW: 37223.1 Da PI: 7.9015

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA53G01081	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	109.9	1.4e-34	46	102	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 + YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++++ AA53G01081 46 ISYKECLKNHAAAIGGHALDGCGEFMPSPSSTpSDPTSLKCAACGCHRNFHRRDPDD 102 78***************************99******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	8.0E-18	43	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.1E-28	46	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.8E-31	48	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.717	48	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	7.3E-29	191	261	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.33E-17	192	261	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.3E-25	200	257	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MDMTPTTTAP KSPEPESETP TRIQPAKPIS FSNGIIKRHQ PNPVVISYKE CLKNHAAAIG 60 GHALDGCGEF MPSPSSTPSD PTSLKCAACG CHRNFHRRDP DDSSLSSAVV PAALPSPHPP 120 SSCPAIEYQS HHRHHPPPPL PSTAPGQPRS PNSSSPPPIS SSYMLLALSG TNKNTGNSLP 180 FSDLNFTGNN LSTHHTPGSR KRFRTKFSQN QKDKMHELAE RIGWKIQKRD EDEIREFCRE 240 IGVDKGVLKV WMHNNKNTFN RRDNPFPGTA VERIDNDNDN ENDNSRGNQS TGTGDETNNN 300 NNDEEVVGRP VEGSGGRGLM HELHRTTQIR RRFAAEDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-19	199	258	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA53G01081

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117188	6e-60	AK117188.1 Arabidopsis thaliana mRNA, clone: RAFL16-72-M15.
GenBank	AP002049	6e-60	AP002049.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYI13.
GenBank	AY093171	6e-60	AY093171.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBank	AY128820	6e-60	AY128820.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBank	CP002686	6e-60	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018458751.1	1e-122	PREDICTED: zinc-finger homeodomain protein 9-like
Swissprot	Q9LHF0	1e-102	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A1J3G0A2	1e-128	A0A1J3G0A2_NOCCA; Zinc-finger homeodomain protein 9
STRING	XP_006395326.1	1e-119	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2220	25	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	2e-81	homeobox protein 34

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]