PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA53G01013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | LBD | ||||||||
Protein Properties | Length: 131aa MW: 14657.6 Da PI: 7.7886 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.7 | 2e-43 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC++dCv+apyf e+p kfanvh++FGasnv+k+l+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l+ el+++++ AA53G01013 10 PCAACKFLRRKCTQDCVFAPYFSPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLTLQRELEETNA 108 7*********************************************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.436 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.0E-43 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MSYSSYTNSP CAACKFLRRK CTQDCVFAPY FSPEEPTKFA NVHRIFGASN VSKILHEVAP 60 HQREDAVNSL AYEAEARLKD PVYGCVGAIS VLQRQVLTLQ RELEETNADL MRYASCQLGP 120 ETTSSYGARR V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-59 | 8 | 119 | 9 | 120 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-59 | 8 | 119 | 9 | 120 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA53G01013 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_566823.1 | 2e-82 | LOB domain-containing protein 25 | ||||
Swissprot | Q8L8Q3 | 2e-83 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A178VKF4 | 4e-81 | A0A178VKF4_ARATH; LBD25 | ||||
TrEMBL | A0A178VL46 | 4e-81 | A0A178VL46_ARATH; LBD25 | ||||
STRING | AT3G27650.1 | 7e-82 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 6e-86 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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