PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA53G00886 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | bHLH | ||||||||
Protein Properties | Length: 996aa MW: 109339 Da PI: 6.2972 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.6 | 3.3e-11 | 357 | 399 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L AA53G00886 357 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 399 79*********************66......****************98 PP | |||||||
2 | HLH | 33 | 1.1e-10 | 817 | 859 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL Av+Y+ +L AA53G00886 817 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAVDYLMEL 859 79*********************66......**************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.866 | 350 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-16 | 353 | 420 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.8E-9 | 356 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-14 | 356 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-15 | 357 | 412 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.33E-11 | 357 | 403 | No hit | No description |
CDD | cd04873 | 1.59E-6 | 470 | 530 | No hit | No description |
PROSITE profile | PS50888 | 15.167 | 810 | 859 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.13E-15 | 813 | 885 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-8 | 816 | 859 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-13 | 816 | 865 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-14 | 817 | 873 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.10E-10 | 817 | 863 | No hit | No description |
CDD | cd04873 | 3.36E-5 | 926 | 985 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 996 aa Download sequence Send to blast |
GERERGGKDG VSDGERTKVR EKESRESGNC HYSGKSLDFE MVLDGNGGGV WLGGGGGVER 60 SHEEENNGGN EEASWGRNQE DGGASLSQFK PLLEADWFSN STPQDLQMLQ NQQDFRFLGA 120 FPFNPNDNLL LQQSIDSSSS CSPSQTFSLD PSQQHQQFLA KSCVGSLLNV PSSTNPFDNA 180 FEFGSDSGYL AQIHGNQVPI SMGFGGLSQM GNRDLTCIPD FLSSRSLLAP ENNTTPLCGG 240 GGFTPLELEG FGNPNGGFGN RAKVLKPLEV LASSGAQPTL FQKRAAMRQS SGSKMGNSES 300 SGLRKLSDDG EMDETGIEVS GLNYESDELN ESVKAAESVQ NGNGKGKKKG MPAKNLMAER 360 RRRKKLNDRL YMLRSVVPKI SKMDRASILG DAIDYLKELL QRINDLHNEL ESTPPGSLPP 420 TSSSFHPLTP TPQTLSCRVK EELCPSSLPS PKGQQARVEV RLREGRAVNI HMFCGRRPGL 480 LLATMKALDS LGLDVQQAVI SCFNGFALDV FRAEQCQEGQ EILPEQIKAV LFDTAGYADK 540 LFDCNDVGKT RVQRKMMKKE EHDDGSLSQF KPMLAGDWFS NSPQHDLQPH QDFRFLDGFR 600 FNQNDNLLLQ HSIDSSSSCS PSQTFNFDPL QHQEQSFLAT NPYVASLLSV PSANPFNNAF 660 EFTSQSDILR HLHGNQSMGF SGLSSGSDLS VLAPENRATL RVSEYTTPGL ESVTNGGFGN 720 RAKVLKPLEV LPSSGSQPTL FQKRAAMRQS SESKIENSEI SEIRKLSDKV MGKTKIEISG 780 FNYESDEVNE SFKAAESVQN GGSSKGKKKG MPAKNLMAER RRRKKLNDRL YMLRSVVPKI 840 SKMDRASILG DAVDYLMELL QRINDLHKEL DSNPQTLSSP HPLTPTPQML LPSRVREELC 900 TSSLSSPKEQ QARVEVRVRE GRAVHINMFC GRKAGVLLAT MRALDNLGLD VQQAVISCFN 960 GFSLDVFRAE CEEGREILPE QIKAVLLDTV GYAAVI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 806 | 824 | KKKGMPAKNLMAERRRRKK |
2 | 818 | 825 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that regulates the cold-induced transcription of CBF/DREB1 genes. Binds specifically to the MYC recognition sites (5'-CANNTG-3') found in the CBF3/DREB1A promoter. Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA. Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:17416732, ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA53G00886 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, cold stress and abscisic acid (ABA) treatment. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006395527.1 | 0.0 | transcription factor ICE1 | ||||
Refseq | XP_024007135.1 | 0.0 | transcription factor ICE1 | ||||
Swissprot | Q9LSE2 | 0.0 | ICE1_ARATH; Transcription factor ICE1 | ||||
TrEMBL | D2DHG7 | 0.0 | D2DHG7_EUTSA; ICE-like protein | ||||
TrEMBL | D7R822 | 0.0 | D7R822_EUTHA; Inducer of CBF expression 1 | ||||
STRING | XP_006395527.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1952 | 27 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26744.4 | 0.0 | bHLH family protein |