PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA53G00875

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

LBD

Protein Properties

Length: 118aa MW: 13379.5 Da PI: 8.8366

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA53G00875	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124	7.8e-39	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C++dC+++pyfp ++p+kfa +h+++Ga nv+k+l++lp ++r +a++s+++eA+ ra+dPvyG+vg+i+ lq +++++++ la++++ AA53G00875 6 RCAACKYLRRRCPQDCIFSPYFPPNDPQKFASIHRIYGAGNVSKMLQQLPIQTRAAAVESMCFEAQSRAEDPVYGCVGIIHLLQIHIQETQNLLAKTQA 104 6*******************************************************************************************9999998 PP DUF260 100 e 100 e AA53G00875 105 E 105 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.584	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-39	6	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MNPRKRCAAC KYLRRRCPQD CIFSPYFPPN DPQKFASIHR IYGAGNVSKM LQQLPIQTRA 60 AAVESMCFEA QSRAEDPVYG CVGIIHLLQI HIQETQNLLA KTQAEIAVAR TNIVKEDF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-36	7	106	12	111	LOB family transfactor Ramosa2.1
5ly0_B	7e-36	7	106	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA53G00875

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_189300.1	5e-65	LOB domain-containing protein 24
Swissprot	P59468	4e-66	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A291LR10	1e-62	A0A291LR10_BRARR; Transcription factor LBD23
STRING	AT3G26660.1	2e-64	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-68	LOB domain-containing protein 24