PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00814
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 330aa    MW: 36886.2 Da    PI: 9.7899
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00814genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.97.6e-32168272198
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+ tpsdv+k++rlv+pk++ae+h       ++++ ++  l +ed +g+ W+++++y+++s++yvltkGW++Fvk++gL++gD++ Fk+++ ++++l
  AA53G00814 168 FEKAVTPSDVGKLNRLVIPKHHAEKHfplplsdSNVSVKGLLLNFEDITGKMWRFRYSYWNSSQSYVLTKGWSRFVKEKGLRAGDVISFKRSNGQDQQL 266
                 89*****************************9977778999*************************************************987799989 PP

                 EEEEE- CS
          B3  93 vvkvfr 98 
                 ++++ +
  AA53G00814 267 YIGWKS 272
                 999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-67498IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.9E-39162273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-31164274IPR015300DNA-binding pseudobarrel domain
CDDcd100173.38E-27167261No hitNo description
SMARTSM010191.8E-25168274IPR003340B3 DNA binding domain
PROSITE profilePS5086314.17168272IPR003340B3 DNA binding domain
PfamPF023622.5E-28168273IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEVSSVDEST TSVDSIHIQM VPIKKKNPPA PARKSPPLGL HRMGSGSSVV LDLDNGVVEE  60
AESRKLPSSK YKGDEAARAY DVAAHRFRGR EAVTNFKEMM VDGEGDDVAI FLNAHSKSEI  120
VDMLRKHTYN EELEQSKRNH GSYKVTALGM VVNDVVSMPG FRSAVSLFEK AVTPSDVGKL  180
NRLVIPKHHA EKHFPLPLSD SNVSVKGLLL NFEDITGKMW RFRYSYWNSS QSYVLTKGWS  240
RFVKEKGLRA GDVISFKRSN GQDQQLYIGW KSRIGSDHVM MGRVVRLFGV NICLENDAVV  300
IGGGNKRVKE EEAEMLSLKC NKKQRVFDAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-6816427710121DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G00814
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889996.11e-144AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9ZWM91e-145RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLD7KQD71e-143D7KQD7_ARALL; Uncharacterized protein
STRINGscaffold_101479.11e-144(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-142related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]