PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00752
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 514aa    MW: 56399.2 Da    PI: 7.6985
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00752genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.28.2e-34242298259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgynWrKYGqK+vkgse+prsYY+Ct++ Cpvkkkvers  d++v+ei+Y+g+Hnhe
  AA53G00752 242 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPACPVKKKVERSL-DGQVTEIIYKGQHNHE 298
                 8****************************************.***************8 PP
2WRKY105.33.2e-33414472159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDg++WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a dpk+v++tYeg+Hnh+
  AA53G00752 414 LDDGFRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAAADPKAVVTTYEGKHNHD 472
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-30233300IPR003657WRKY domain
PROSITE profilePS5081124.317236300IPR003657WRKY domain
SuperFamilySSF1182904.84E-26239300IPR003657WRKY domain
SMARTSM007743.5E-37241299IPR003657WRKY domain
PfamPF031061.1E-25242298IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.9E-36399474IPR003657WRKY domain
SuperFamilySSF1182901.83E-29406474IPR003657WRKY domain
PROSITE profilePS5081137.654409474IPR003657WRKY domain
SMARTSM007742.3E-39414473IPR003657WRKY domain
PfamPF031066.3E-26415472IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MAKKDEEEEQ QQLSTSKSLS STRGAQSSRP NLTLPPRPFG EMFFSGGVGF SPGPMTLVSN  60
LFSDPDEFKS FSQLLAGAMT SPASGGTNQT RVTSSVGGGD GNSSGEIDPR FKQNRPTGLM  120
ITQPPGMFTV PPGLSPATLL DSPSFLGLFS PLQGSFGMTH QQALAQVTAQ AVQGNAQMQT  180
QSEYPSSAPP QTSITELSSF STDQQSQIPT SVPESSQPQR ESSEIPVFEH RSQPQNADKP  240
TDDGYNWRKY GQKQVKGSEY PRSYYKCTHP ACPVKKKVER SLDGQVTEII YKGQHNHEPP  300
QNNKRGNKDS MNRNGNLINS RGSSEMASQF QTNSFNKTKR DQETSQATTT EQMSEASDGE  360
EVGNAETSLG EKHEDEPDPK RRNIEVRVSE PAASHRTVTE PRIIVQTMSE VDLLDDGFRW  420
RKYGQKVVKG NPYPRSYYKC TTPGCGVRKH VERAAADPKA VVTTYEGKHN HDVPAARTSS  480
HSTAQIRSNN LHNAASLSQE QPIARLRLKE EQIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-44242475878Probable WRKY transcription factor 4
2lex_A4e-44242475878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G00752
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_178433.10.0WRKY DNA-binding protein 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLQ0WPM80.0Q0WPM8_ARATH; Putative WRKY DNA-binding protein
STRINGBostr.0556s0160.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]