PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA53G00719 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | Whirly | ||||||||
Protein Properties | Length: 287aa MW: 31601.8 Da PI: 9.4889 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 219 | 4.1e-68 | 110 | 248 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 s+yk+kaal++++++p+f+al+sg++kl+++G+l+l++a+a+++r+ydW++kq+f+ls+te+++l++l++kesceffhdp++++++eGkvrk+lkvePl AA53G00719 110 SIYKGKAALTIEPRAPEFVALESGAIKLSKEGFLILQFAPAAGVRQYDWSRKQVFSLSVTEIGNLISLGPKESCEFFHDPFKGKGDEGKVRKVLKVEPL 208 7************************************************************************************************** PP Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 pdGsG f+nlsv+n+l++++es+++P++kaefavl+s+++ AA53G00719 209 PDGSGRFFNLSVQNKLLNVDESVYIPITKAEFAVLISAFN 248 *************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.6E-77 | 101 | 270 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.75E-80 | 103 | 287 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.8E-59 | 111 | 245 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MSQLLSSSPR MVLNSKSLIT HQLTDASFLS SYSALTVGGF AGKRYGVAMK PTGRVELSVN 60 SRQADYFEKQ RFGDSSSSPA YSPQNGSSYG SFDKYCSLGL AEGRFYVGHS IYKGKAALTI 120 EPRAPEFVAL ESGAIKLSKE GFLILQFAPA AGVRQYDWSR KQVFSLSVTE IGNLISLGPK 180 ESCEFFHDPF KGKGDEGKVR KVLKVEPLPD GSGRFFNLSV QNKLLNVDES VYIPITKAEF 240 AVLISAFNFI LPHLIGWQAF ANSIKPEDAN RLNNSSVKYG GDYEWNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koq_A | 1e-112 | 104 | 265 | 8 | 169 | Single-stranded DNA-binding protein WHY3, chloroplastic |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In the nucleus, is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA53G00719 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT015336 | 0.0 | BT015336.1 Arabidopsis thaliana At2g02740 gene, complete cds. | |||
GenBank | BT015641 | 0.0 | BT015641.1 Arabidopsis thaliana At2g02740 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_178377.2 | 1e-157 | ssDNA-binding transcriptional regulator | ||||
Swissprot | Q66GR6 | 1e-158 | WHY3_ARATH; Single-stranded DNA-binding protein WHY3, chloroplastic | ||||
TrEMBL | A0A178VLN3 | 1e-156 | A0A178VLN3_ARATH; WHY3 | ||||
STRING | AT2G02740.1 | 1e-157 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5023 | 27 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02740.2 | 1e-163 | ssDNA-binding transcriptional regulator |
Publications ? help Back to Top | |||
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