PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00569
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GeBP
Protein Properties Length: 411aa    MW: 45652.9 Da    PI: 5.8916
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00569genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573131.33.6e-41177268298
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                 +fqrlwse+Dei++LqG+idfk++ gksp++d+++fy+fvkksisf+vsk+q+++Kir+LKkK+ kk  +     epsfsk+hd+k+f lsk iWgs
  AA53G00569 177 YFQRLWSEDDEIAVLQGMIDFKTEIGKSPYEDMNGFYKFVKKSISFDVSKNQFMDKIRSLKKKYLKKNGE-----EPSFSKPHDHKSFSLSKHIWGS 268
                 89**************************************************************987666.....********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.7E-33178267IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MTKKHLNPLE DPPTASSSDD EEVETSGGEE EEDEEQKSDS SSEEDNSKKP PQIPSGKTLE  60
APPAVTIAVP GRTPNSNSDS GSETETDSDS ETDKKERVTT NPGSVKTISI LNSKPKKEIR  120
STDESLPATA LALPAAKSAG KRPSQEGNNS TDVNAKRAKN VSGDDEKKIG EDPKKPYFQR  180
LWSEDDEIAV LQGMIDFKTE IGKSPYEDMN GFYKFVKKSI SFDVSKNQFM DKIRSLKKKY  240
LKKNGEEPSF SKPHDHKSFS LSKHIWGSEG MGLESVVKSN GKAKKSQKSK AIKLDSVKQE  300
LYPSPNGKKL DDDRILMIEG GTASAFTQTD VKKPDWFENS FLARSISGFG VDEYSVRERW  360
SMVADETKKK FEEKWKVLQA KEFEFAVKKT ELLHEVTGVI AEVSKNKPLN I
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G00569
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391972.11e-146probable transcription factor At1g61730
SwissprotQ9SYA91e-103STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLV4KPG51e-144V4KPG5_EUTSA; Uncharacterized protein
STRINGXP_006391972.11e-145(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.16e-75DNA-binding storekeeper protein-related transcriptional regulator