PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA53G00549 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | NF-YC | ||||||||
Protein Properties | Length: 191aa MW: 21767.6 Da PI: 9.8509 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 49.5 | 9.6e-16 | 88 | 173 | 14 | 99 |
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++ k ++P+ ri++i+++d+ ++i +a l+ ka e+f+ +t ++ + + k++ ++ ++++v++ + ++fl d vp++ AA53G00549 88 EETKTFRFPMNRIRRIMRSDNTAHQIMQDAVFLVNKATEMFMDRFTEEAYESSVQDKKKFIHYKHLSSVVSNEERYEFLADCVPEK 173 5678889****************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.02E-20 | 77 | 172 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-20 | 94 | 157 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.4E-24 | 95 | 172 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MKEKEKKTRG DGVCTTGKRK IRSAASKNRK PPSKIHRAIP SEVHEISETS SSDSTEEARD 60 GGGVESRKMV KARVEKNHRD SVIGGGVEET KTFRFPMNRI RRIMRSDNTA HQIMQDAVFL 120 VNKATEMFMD RFTEEAYESS VQDKKKFIHY KHLSSVVSNE ERYEFLADCV PEKLRADVAL 180 EQWKTAMADA A |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA53G00549 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023645785.1 | 1e-72 | nuclear transcription factor Y subunit gamma | ||||
TrEMBL | A0A087HLV7 | 5e-70 | A0A087HLV7_ARAAL; Uncharacterized protein | ||||
STRING | Cagra.1637s0006.1.p | 7e-72 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11190 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 5e-59 | nuclear factor Y, subunit C10 |