PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00255
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family SRS
Protein Properties Length: 335aa    MW: 37502 Da    PI: 7.6006
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00255genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70224.11e-072893569
      DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....ae 69
                + +C +CGn a+  C ++ C+ CC   +  C  hv  t  ++  +++   + +++ss++++s+    ++
  AA53G00255 28 KPKCIQCGNVARSRCPFQSCKGCCARAENPCPIHVLKTAASSGEKSQ---TPSTPSSDQKSSEgtpgTA 93
                568********************************999665554444...4444444333333222322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.3E-530100IPR007818Protein of unknown function DUF702
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAASSPSLSN NGLSASVTPP KTLRGLNKPK CIQCGNVARS RCPFQSCKGC CARAENPCPI  60
HVLKTAASSG EKSQTPSTPS SDQKSSEGTP GTATRVSSIR QLSSSFAQFN NLNAASRLRK  120
PLTIKDAQAL NEWRFTKLKE YRERNIEVEN EAFDRYMSNV NLLEEAFSVT SFPEEEDPGE  180
EAASEQNDEE RMVTEVKLRL RSNSTRTESF KKRITEIVNS CLTKLQKPES CDSSDEIERR  240
IKRSKWEEKG SALNEIIDKL NKARTEEDLK SCIEMKSKLK SFVHHPGTSF AQVSSIVATE  300
KNKDLPGFVR KVEISEEDLQ RIGEQFQSFD EFESL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G00255
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415156.10.0uncharacterized protein LOC18991770
TrEMBLV4KQH01e-179V4KQH0_EUTSA; Uncharacterized protein
STRINGBostr.3359s0086.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73621317
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32730.11e-177