PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA51G00036

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

HB-other

Protein Properties

Length: 1674aa MW: 188816 Da PI: 5.0998

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA51G00036	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	36	91	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps+++r+ L+kklgL +rq ++WF+ rR k+kk AA51G00036 36 PKRQMKTPFQLETLENVYAEETYPSEATRAALSKKLGLADRQLQMWFCHRRLKDKK 91 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.4E-17	20	91	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-15	31	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.597	32	92	IPR001356	Homeobox domain
SMART	SM00389	2.9E-17	34	96	IPR001356	Homeobox domain
Pfam	PF00046	5.7E-16	36	91	IPR001356	Homeobox domain
CDD	cd00086	4.56E-13	37	91	No hit	No description
SMART	SM00571	1.3E-23	512	571	IPR018501	DDT domain
PROSITE profile	PS50827	17.224	512	571	IPR018501	DDT domain
Pfam	PF02791	4.6E-17	513	568	IPR018501	DDT domain
Pfam	PF05066	8.8E-16	694	761	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.6E-7	888	930	IPR028942	WHIM1 domain
Pfam	PF15613	6.4E-13	1047	1119	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1674 aa Download sequence Send to blast
MEMGSDGDNQ IIRSGNGGGS KKRKIESSDD RLANKPKRQM KTPFQLETLE NVYAEETYPS 60 EATRAALSKK LGLADRQLQM WFCHRRLKDK KDAQSKKPVE PATVKPRVND LPAGSAPELD 120 SRSGSGSGSG CSPYSDSRRN FASGSSSRAE LDEYEPMGKA SHEPRLPSVV RRAIVCIEAQ 180 LGEPLRDDGP ILGMEFDPLP PGAFGTPIAM QKHEGHPYES KMYESHDARP RRSLDDPSSY 240 TPEMYGRYGE NQSRGVDYEI ARSRSSSFMH GNGPLPRSYG KHGNASRNCA SSQQDMLSPN 300 VASAHHGDNS SVHGSEDPYM LSDRKGKINE VRLGRGGETR ENRAQKELEK LEIQRKRNEE 360 RMRKEMERHE RERRKEEDRL MRERVKEEER SQREQRREIE RREKFLQREY ERAEKKKQKE 420 ELRQERDAIR RKIAIERATA RRIAKESMDL IEDEQLELME LAATSKGLPS VLQLDHDTLQ 480 NLELYRDSLS IFPPKSLQLK MPFAIAPWKD SEESVGNLLM VWRFLISFSD VFGLWPFTLD 540 EFIQAFHDYD SRLLGEIHVT LLRSIIRDIE DVARTPFTGI GNNQYTTANP EGGHPQIVEG 600 AYAWGFDIGS WQKHLSSLTW PEILRQLALS AGFGPKLKKT DSRLTHPGDK DEAKGCEDII 660 STIRSGSAAV TAFALMREKG LLAPRKSRHR LTPGTVKFAA FHVLSLEGSK GLTVLELADK 720 IQKSGLRDLT TSKTPEASIS VALTRDVKLF ERIAPSTYCV RAPYWKDPAD GVAILADARK 780 KIRAFENGFT GPDDVNDLER DEDFECDVDE DPEVDDLATL ASASKSSDLA EPNVLSEKIE 840 IEKVFASPLS AVKSEGPKCL SEQHGLSKDT GGCSLDNKNA VIDESNQGQT WIQGLTEGDY 900 CHLSVEERLN ALVALVGIVN EGNSIRSVLE DRMEAANSLK KQMWAEAQLD NSCMRDAIKL 960 DFQNLSSSKT ESTTAGVQTI QSSTRERDSS DRDEPKPMEI VSNDFNNQEA NLSQENCSSQ 1020 NGYASKRSRS QLKSYIGHKA EEVYPYRSLP LGQDRRHNRY WHFAASASKS DPCSGLLFVE 1080 LHDGKWRLID TEEAFDTLVA SLDMRGIRES HLRIMLMKIE ESFKENACKQ ASYRNPCSKE 1140 KSVAKTNSVS DSPPNSVSPS SAISGSSSDP METSTSIRVE QGRNDVEKKN LSKRFYDFQR 1200 WMWNELYKSL PSGARKYGKK RSELLATCEM CVVSYLSEYT HCSSCQQRLN MVDDSEREML 1260 STKDASLMEF SLPFGLRLLK ALLVYLEASI PDEAFESFWT EDKRKSWGFR LNASSSPEEL 1320 LQVLTCLESA VKKESLSSSF ASAKELMGIA AAAAADDQAS MAVLPWIPKT VSAVALRLSD 1380 LDASIMYVKP EKPEPNLEDE NKQTSFPYPG NSPLKNKRPK MQEDEEDVVP NSSNRRNKRG 1440 RVNHGSGSGR KVKRKKPQTG PGPNKFVSSG GRNVPVDRNL MSLELNHQIH GRGKRTVRKR 1500 PDISDDENDH TITRMSNINS PKREEEEVEE EYEEEEEEEQ RFRDIDTDWT VQTPREIDED 1560 WAAARPVERE DGESDNSIEE EAVESSSSEE EEDGHFAAEY TERNKWGLNW RRGPQNEAME 1620 EEEEEVVGRV NVNAAIEEEE AEMSESSEDN NNNNTANNYD RDSEEDYNSS DDDS

Sequence ? help Back to Top

Protein Sequence Length: 1674 aa Download sequence Send to blast

MEMGSDGDNQ IIRSGNGGGS KKRKIESSDD RLANKPKRQM KTPFQLETLE NVYAEETYPS  60
EATRAALSKK LGLADRQLQM WFCHRRLKDK KDAQSKKPVE PATVKPRVND LPAGSAPELD  120
SRSGSGSGSG CSPYSDSRRN FASGSSSRAE LDEYEPMGKA SHEPRLPSVV RRAIVCIEAQ  180
LGEPLRDDGP ILGMEFDPLP PGAFGTPIAM QKHEGHPYES KMYESHDARP RRSLDDPSSY  240
TPEMYGRYGE NQSRGVDYEI ARSRSSSFMH GNGPLPRSYG KHGNASRNCA SSQQDMLSPN  300
VASAHHGDNS SVHGSEDPYM LSDRKGKINE VRLGRGGETR ENRAQKELEK LEIQRKRNEE  360
RMRKEMERHE RERRKEEDRL MRERVKEEER SQREQRREIE RREKFLQREY ERAEKKKQKE  420
ELRQERDAIR RKIAIERATA RRIAKESMDL IEDEQLELME LAATSKGLPS VLQLDHDTLQ  480
NLELYRDSLS IFPPKSLQLK MPFAIAPWKD SEESVGNLLM VWRFLISFSD VFGLWPFTLD  540
EFIQAFHDYD SRLLGEIHVT LLRSIIRDIE DVARTPFTGI GNNQYTTANP EGGHPQIVEG  600
AYAWGFDIGS WQKHLSSLTW PEILRQLALS AGFGPKLKKT DSRLTHPGDK DEAKGCEDII  660
STIRSGSAAV TAFALMREKG LLAPRKSRHR LTPGTVKFAA FHVLSLEGSK GLTVLELADK  720
IQKSGLRDLT TSKTPEASIS VALTRDVKLF ERIAPSTYCV RAPYWKDPAD GVAILADARK  780
KIRAFENGFT GPDDVNDLER DEDFECDVDE DPEVDDLATL ASASKSSDLA EPNVLSEKIE  840
IEKVFASPLS AVKSEGPKCL SEQHGLSKDT GGCSLDNKNA VIDESNQGQT WIQGLTEGDY  900
CHLSVEERLN ALVALVGIVN EGNSIRSVLE DRMEAANSLK KQMWAEAQLD NSCMRDAIKL  960
DFQNLSSSKT ESTTAGVQTI QSSTRERDSS DRDEPKPMEI VSNDFNNQEA NLSQENCSSQ  1020
NGYASKRSRS QLKSYIGHKA EEVYPYRSLP LGQDRRHNRY WHFAASASKS DPCSGLLFVE  1080
LHDGKWRLID TEEAFDTLVA SLDMRGIRES HLRIMLMKIE ESFKENACKQ ASYRNPCSKE  1140
KSVAKTNSVS DSPPNSVSPS SAISGSSSDP METSTSIRVE QGRNDVEKKN LSKRFYDFQR  1200
WMWNELYKSL PSGARKYGKK RSELLATCEM CVVSYLSEYT HCSSCQQRLN MVDDSEREML  1260
STKDASLMEF SLPFGLRLLK ALLVYLEASI PDEAFESFWT EDKRKSWGFR LNASSSPEEL  1320
LQVLTCLESA VKKESLSSSF ASAKELMGIA AAAAADDQAS MAVLPWIPKT VSAVALRLSD  1380
LDASIMYVKP EKPEPNLEDE NKQTSFPYPG NSPLKNKRPK MQEDEEDVVP NSSNRRNKRG  1440
RVNHGSGSGR KVKRKKPQTG PGPNKFVSSG GRNVPVDRNL MSLELNHQIH GRGKRTVRKR  1500
PDISDDENDH TITRMSNINS PKREEEEVEE EYEEEEEEEQ RFRDIDTDWT VQTPREIDED  1560
WAAARPVERE DGESDNSIEE EAVESSSSEE EEDGHFAAEY TERNKWGLNW RRGPQNEAME  1620
EEEEEVVGRV NVNAAIEEEE AEMSESSEDN NNNNTANNYD RDSEEDYNSS DDDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	91	RRLKDKKD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA51G00036

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC010155	1e-64	AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBank	AK229841	1e-64	AK229841.1 Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL22-02-I21.
GenBank	CP002684	1e-64	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006415655.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	V4L2Q3	0.0	V4L2Q3_EUTSA; Uncharacterized protein
STRING	XP_006415655.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1