PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA50G00008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | G2-like | ||||||||
Protein Properties | Length: 256aa MW: 28150 Da PI: 7.7701 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 50 | 6.5e-16 | 13 | 42 | 26 | 55 |
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPkti+++m+vkgLtl+h+kSHLQk+Rl AA50G00008 13 EATPKTIMRTMGVKGLTLYHLKSHLQKFRL 42 7****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.91E-6 | 2 | 43 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-14 | 12 | 44 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-9 | 13 | 43 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 1.2E-10 | 86 | 107 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Pfam | PF14379 | 4.5E-11 | 117 | 142 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
SFFLLLCMFL LTEATPKTIM RTMGVKGLTL YHLKSHLQKF RLGRQACKES TENSKDASCV 60 GESQDTGSSS TSSLRLAAQE QNEGYQVTEA LRAQMEVQRR LHEQLEVCFL SFFLANVQRR 120 LQLRMEAQGK YLQSILEKAC KAFDEQATTF PGLEAAREEL SELAIKVSNG CQGTTVAFDA 180 TKMIMPSLSE LGVAIDHKNN NNITGNCSLE SSLTSTTNGS SVSAALMKKR HRGSFNNGES 240 IALGYETGWI VPSSNV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA50G00008 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006414870.1 | 1e-136 | protein PHR1-LIKE 3 isoform X1 | ||||
Swissprot | Q8LAJ7 | 1e-131 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | V4MSP3 | 1e-134 | V4MSP3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006414870.1 | 1e-135 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3515 | 25 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.2 | 1e-120 | G2-like family protein |
Publications ? help Back to Top | |||
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